Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.31■□□□□ 0.2
DEPDC4Q8N2C3 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
DEPDC4Q8N2C3 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
DEPDC4Q8N2C3 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
DEPDC4Q8N2C3 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
DEPDC4Q8N2C3 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC16.31■□□□□ 0.2
DEPDC4Q8N2C3 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
DEPDC4Q8N2C3 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.31■□□□□ 0.2
DEPDC4Q8N2C3 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
DEPDC4Q8N2C3 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
DEPDC4Q8N2C3 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
DEPDC4Q8N2C3 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
DEPDC4Q8N2C3 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
DEPDC4Q8N2C3 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
DEPDC4Q8N2C3 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
DEPDC4Q8N2C3 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC16.3■□□□□ 0.2
DEPDC4Q8N2C3 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.3■□□□□ 0.2
DEPDC4Q8N2C3 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.3■□□□□ 0.2
DEPDC4Q8N2C3 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
DEPDC4Q8N2C3 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
DEPDC4Q8N2C3 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
DEPDC4Q8N2C3 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
DEPDC4Q8N2C3 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
DEPDC4Q8N2C3 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
DEPDC4Q8N2C3 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
DEPDC4Q8N2C3 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
DEPDC4Q8N2C3 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC16.3■□□□□ 0.2
DEPDC4Q8N2C3 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC16.3■□□□□ 0.2
DEPDC4Q8N2C3 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
DEPDC4Q8N2C3 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC16.3■□□□□ 0.2
DEPDC4Q8N2C3 AC011558.1-201ENST00000623459 338 ntBASIC16.3■□□□□ 0.2
DEPDC4Q8N2C3 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC16.3■□□□□ 0.2
DEPDC4Q8N2C3 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.3■□□□□ 0.2
DEPDC4Q8N2C3 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
DEPDC4Q8N2C3 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
DEPDC4Q8N2C3 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
DEPDC4Q8N2C3 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.3■□□□□ 0.2
DEPDC4Q8N2C3 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC16.3■□□□□ 0.2
DEPDC4Q8N2C3 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC16.3■□□□□ 0.2
DEPDC4Q8N2C3 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
DEPDC4Q8N2C3 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
DEPDC4Q8N2C3 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
DEPDC4Q8N2C3 MST1L-201ENST00000442552 2185 ntBASIC16.3■□□□□ 0.2
DEPDC4Q8N2C3 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC16.3■□□□□ 0.2
DEPDC4Q8N2C3 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
DEPDC4Q8N2C3 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
DEPDC4Q8N2C3 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
DEPDC4Q8N2C3 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
DEPDC4Q8N2C3 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 Telomerase-vert.1-201ENST00000363312 438 ntBASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 FAM8A6P-201ENST00000407496 1135 ntBASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 AC009947.2-201ENST00000444014 672 ntBASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 MIR3180-4-201ENST00000582223 153 ntBASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
DEPDC4Q8N2C3 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
DEPDC4Q8N2C3 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 67.4 ms