Protein–RNA interactions for Protein: P78413

IRX4, Iroquois-class homeodomain protein IRX-4, humanhuman

Predictions only

Length 519 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IRX4P78413 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
IRX4P78413 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC18.2■□□□□ 0.5
IRX4P78413 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
IRX4P78413 AL353692.3-201ENST00000407031 1396 ntBASIC18.2■□□□□ 0.5
IRX4P78413 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
IRX4P78413 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
IRX4P78413 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
IRX4P78413 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
IRX4P78413 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
IRX4P78413 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
IRX4P78413 POM121L3P-201ENST00000419331 1163 ntBASIC18.2■□□□□ 0.5
IRX4P78413 SLC25A6P5-201ENST00000435663 894 ntBASIC18.2■□□□□ 0.5
IRX4P78413 AF186996.4-201ENST00000467186 377 ntBASIC18.2■□□□□ 0.5
IRX4P78413 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
IRX4P78413 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC18.2■□□□□ 0.5
IRX4P78413 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC18.2■□□□□ 0.5
IRX4P78413 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC18.2■□□□□ 0.5
IRX4P78413 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
IRX4P78413 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
IRX4P78413 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
IRX4P78413 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
IRX4P78413 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
IRX4P78413 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
IRX4P78413 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
IRX4P78413 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC18.2■□□□□ 0.5
IRX4P78413 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
IRX4P78413 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
IRX4P78413 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
IRX4P78413 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.19■□□□□ 0.5
IRX4P78413 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC18.19■□□□□ 0.5
IRX4P78413 OR6D1P-203ENST00000641209 4860 ntBASIC18.19■□□□□ 0.5
IRX4P78413 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
IRX4P78413 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.19■□□□□ 0.5
IRX4P78413 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
IRX4P78413 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.19■□□□□ 0.5
IRX4P78413 CROCCP1-201ENST00000426910 5675 ntBASIC18.19■□□□□ 0.5
IRX4P78413 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
IRX4P78413 EMD-201ENST00000369835 966 ntTSL 3 BASIC18.19■□□□□ 0.5
IRX4P78413 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC18.19■□□□□ 0.5
IRX4P78413 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
IRX4P78413 AC093909.1-201ENST00000504731 1122 ntBASIC18.19■□□□□ 0.5
IRX4P78413 RNPS1P1-201ENST00000507437 918 ntBASIC18.19■□□□□ 0.5
IRX4P78413 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC18.19■□□□□ 0.5
IRX4P78413 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC18.19■□□□□ 0.5
IRX4P78413 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC18.19■□□□□ 0.5
IRX4P78413 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC18.19■□□□□ 0.5
IRX4P78413 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC18.19■□□□□ 0.5
IRX4P78413 MIR3180-4-201ENST00000582223 153 ntBASIC18.19■□□□□ 0.5
IRX4P78413 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
IRX4P78413 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC18.19■□□□□ 0.5
IRX4P78413 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC18.19■□□□□ 0.5
IRX4P78413 AL591684.3-201ENST00000605187 298 ntBASIC18.19■□□□□ 0.5
IRX4P78413 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC18.19■□□□□ 0.5
IRX4P78413 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
IRX4P78413 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
IRX4P78413 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
IRX4P78413 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
IRX4P78413 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
IRX4P78413 PMS2P7-201ENST00000506558 1336 ntBASIC18.19■□□□□ 0.5
IRX4P78413 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
IRX4P78413 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
IRX4P78413 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC18.19■□□□□ 0.5
IRX4P78413 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
IRX4P78413 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
IRX4P78413 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
IRX4P78413 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
IRX4P78413 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
IRX4P78413 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
IRX4P78413 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC18.18■□□□□ 0.5
IRX4P78413 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
IRX4P78413 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
IRX4P78413 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
IRX4P78413 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC18.18■□□□□ 0.5
IRX4P78413 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
IRX4P78413 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
IRX4P78413 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
IRX4P78413 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
IRX4P78413 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC18.18■□□□□ 0.5
IRX4P78413 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
IRX4P78413 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
IRX4P78413 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
IRX4P78413 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
IRX4P78413 KRT8P50-201ENST00000562022 1438 ntBASIC18.18■□□□□ 0.5
IRX4P78413 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC18.18■□□□□ 0.5
IRX4P78413 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
IRX4P78413 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC18.18■□□□□ 0.5
IRX4P78413 MIR940-201ENST00000401276 94 ntBASIC18.18■□□□□ 0.5
IRX4P78413 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
IRX4P78413 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC18.18■□□□□ 0.5
IRX4P78413 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC18.18■□□□□ 0.5
IRX4P78413 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
IRX4P78413 TERC-201ENST00000602385 541 ntBASIC18.18■□□□□ 0.5
IRX4P78413 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
IRX4P78413 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
IRX4P78413 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
IRX4P78413 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.18■□□□□ 0.5
IRX4P78413 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
IRX4P78413 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
IRX4P78413 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
IRX4P78413 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms