Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC19.24■□□□□ 0.67
PEX3P56589 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC19.24■□□□□ 0.67
PEX3P56589 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PEX3P56589 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC19.24■□□□□ 0.67
PEX3P56589 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
PEX3P56589 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
PEX3P56589 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC19.24■□□□□ 0.67
PEX3P56589 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
PEX3P56589 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PEX3P56589 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC19.23■□□□□ 0.67
PEX3P56589 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PEX3P56589 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PEX3P56589 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC19.23■□□□□ 0.67
PEX3P56589 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
PEX3P56589 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PEX3P56589 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PEX3P56589 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
PEX3P56589 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PEX3P56589 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PEX3P56589 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PEX3P56589 MED22-202ENST00000371999 987 ntTSL 3 BASIC19.23■□□□□ 0.67
PEX3P56589 PRYP5-201ENST00000451909 266 ntBASIC19.23■□□□□ 0.67
PEX3P56589 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC19.23■□□□□ 0.67
PEX3P56589 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
PEX3P56589 AF186996.4-201ENST00000467186 377 ntBASIC19.23■□□□□ 0.67
PEX3P56589 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PEX3P56589 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC19.23■□□□□ 0.67
PEX3P56589 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PEX3P56589 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC19.23■□□□□ 0.67
PEX3P56589 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
PEX3P56589 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PEX3P56589 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PEX3P56589 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PEX3P56589 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC19.23■□□□□ 0.67
PEX3P56589 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC19.22■□□□□ 0.67
PEX3P56589 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
PEX3P56589 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.22■□□□□ 0.67
PEX3P56589 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
PEX3P56589 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PEX3P56589 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PEX3P56589 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
PEX3P56589 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
PEX3P56589 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PEX3P56589 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC19.22■□□□□ 0.67
PEX3P56589 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PEX3P56589 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PEX3P56589 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PEX3P56589 RAB17-203ENST00000409576 466 ntTSL 3 BASIC19.22■□□□□ 0.67
PEX3P56589 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC19.22■□□□□ 0.67
PEX3P56589 RPS2P1-201ENST00000434010 821 ntBASIC19.22■□□□□ 0.67
PEX3P56589 HNRNPDP1-201ENST00000439535 754 ntBASIC19.22■□□□□ 0.67
PEX3P56589 AC018712.1-201ENST00000455767 687 ntBASIC19.22■□□□□ 0.67
PEX3P56589 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC19.22■□□□□ 0.67
PEX3P56589 RNF151-202ENST00000569210 853 ntTSL 2 BASIC19.22■□□□□ 0.67
PEX3P56589 PNMT-203ENST00000581428 677 ntTSL 2 BASIC19.22■□□□□ 0.67
PEX3P56589 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
PEX3P56589 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
PEX3P56589 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC19.22■□□□□ 0.67
PEX3P56589 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PEX3P56589 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
PEX3P56589 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
PEX3P56589 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
PEX3P56589 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC19.22■□□□□ 0.67
PEX3P56589 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PEX3P56589 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
PEX3P56589 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC19.21■□□□□ 0.67
PEX3P56589 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PEX3P56589 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC19.21■□□□□ 0.67
PEX3P56589 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PEX3P56589 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
PEX3P56589 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
PEX3P56589 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
PEX3P56589 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC19.21■□□□□ 0.67
PEX3P56589 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PEX3P56589 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
PEX3P56589 ENSA-206ENST00000361631 725 ntTSL 2 BASIC19.21■□□□□ 0.67
PEX3P56589 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PEX3P56589 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
PEX3P56589 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC19.21■□□□□ 0.67
PEX3P56589 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PEX3P56589 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC19.21■□□□□ 0.67
PEX3P56589 FDX1P1-201ENST00000449115 551 ntBASIC19.21■□□□□ 0.67
PEX3P56589 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
PEX3P56589 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC19.21■□□□□ 0.67
PEX3P56589 MSRA-206ENST00000521209 814 ntTSL 3 BASIC19.21■□□□□ 0.67
PEX3P56589 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC19.21■□□□□ 0.67
PEX3P56589 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
PEX3P56589 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PEX3P56589 AL138688.1-201ENST00000624851 1594 ntBASIC19.21■□□□□ 0.67
PEX3P56589 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC19.21■□□□□ 0.67
PEX3P56589 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC19.21■□□□□ 0.67
PEX3P56589 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PEX3P56589 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
PEX3P56589 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
PEX3P56589 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
PEX3P56589 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PEX3P56589 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC19.21■□□□□ 0.66
PEX3P56589 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PEX3P56589 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PEX3P56589 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms