Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
CXCL12P48061 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CXCL12P48061 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CXCL12P48061 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CXCL12P48061 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC17.28■□□□□ 0.36
CXCL12P48061 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CXCL12P48061 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
CXCL12P48061 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CXCL12P48061 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CXCL12P48061 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CXCL12P48061 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CXCL12P48061 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC17.28■□□□□ 0.36
CXCL12P48061 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
CXCL12P48061 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.28■□□□□ 0.36
CXCL12P48061 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CXCL12P48061 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CXCL12P48061 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CXCL12P48061 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CXCL12P48061 AC093677.2-201ENST00000600169 1863 ntBASIC17.27■□□□□ 0.36
CXCL12P48061 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CXCL12P48061 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC17.27■□□□□ 0.36
CXCL12P48061 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC17.27■□□□□ 0.36
CXCL12P48061 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CXCL12P48061 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CXCL12P48061 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC17.27■□□□□ 0.36
CXCL12P48061 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CXCL12P48061 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CXCL12P48061 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC17.27■□□□□ 0.36
CXCL12P48061 RBPMS2P1-201ENST00000437762 623 ntBASIC17.27■□□□□ 0.36
CXCL12P48061 AC125807.1-201ENST00000483097 614 ntBASIC17.27■□□□□ 0.36
CXCL12P48061 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC17.27■□□□□ 0.36
CXCL12P48061 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC17.27■□□□□ 0.36
CXCL12P48061 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
CXCL12P48061 AL135744.1-201ENST00000565098 629 ntBASIC17.27■□□□□ 0.36
CXCL12P48061 RARRES2P8-201ENST00000566335 367 ntBASIC17.27■□□□□ 0.36
CXCL12P48061 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CXCL12P48061 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CXCL12P48061 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC17.27■□□□□ 0.36
CXCL12P48061 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC17.27■□□□□ 0.36
CXCL12P48061 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CXCL12P48061 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CXCL12P48061 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CXCL12P48061 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CXCL12P48061 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CXCL12P48061 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
CXCL12P48061 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.27■□□□□ 0.35
CXCL12P48061 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.35
CXCL12P48061 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CXCL12P48061 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CXCL12P48061 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CXCL12P48061 AL135999.2-201ENST00000622438 1686 ntBASIC17.26■□□□□ 0.35
CXCL12P48061 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CXCL12P48061 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CXCL12P48061 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
CXCL12P48061 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CXCL12P48061 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CXCL12P48061 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
CXCL12P48061 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CXCL12P48061 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CXCL12P48061 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC17.26■□□□□ 0.35
CXCL12P48061 BAD-202ENST00000394531 631 ntTSL 3 BASIC17.26■□□□□ 0.35
CXCL12P48061 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
CXCL12P48061 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC17.26■□□□□ 0.35
CXCL12P48061 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC17.26■□□□□ 0.35
CXCL12P48061 FAM207CP-201ENST00000443486 507 ntBASIC17.26■□□□□ 0.35
CXCL12P48061 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC17.26■□□□□ 0.35
CXCL12P48061 BAD-207ENST00000544785 525 ntTSL 3 BASIC17.26■□□□□ 0.35
CXCL12P48061 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
CXCL12P48061 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC17.26■□□□□ 0.35
CXCL12P48061 AC140878.1-201ENST00000565277 250 ntBASIC17.26■□□□□ 0.35
CXCL12P48061 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC17.26■□□□□ 0.35
CXCL12P48061 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC17.26■□□□□ 0.35
CXCL12P48061 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CXCL12P48061 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CXCL12P48061 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CXCL12P48061 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CXCL12P48061 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CXCL12P48061 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CXCL12P48061 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.25■□□□□ 0.35
CXCL12P48061 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CXCL12P48061 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC17.25■□□□□ 0.35
CXCL12P48061 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC17.25■□□□□ 0.35
CXCL12P48061 GSAP-205ENST00000430584 600 ntTSL 5 BASIC17.25■□□□□ 0.35
CXCL12P48061 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC17.25■□□□□ 0.35
CXCL12P48061 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
CXCL12P48061 AL512638.1-201ENST00000457493 794 ntBASIC17.25■□□□□ 0.35
CXCL12P48061 HLA-J-202ENST00000469281 1241 ntBASIC17.25■□□□□ 0.35
CXCL12P48061 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CXCL12P48061 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CXCL12P48061 IGHV3-62-201ENST00000520057 340 ntBASIC17.25■□□□□ 0.35
CXCL12P48061 DUX4L17-201ENST00000557360 1267 ntBASIC17.25■□□□□ 0.35
CXCL12P48061 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC17.25■□□□□ 0.35
CXCL12P48061 LINC02560-201ENST00000596379 459 ntBASIC17.25■□□□□ 0.35
CXCL12P48061 AL161645.1-201ENST00000622716 1255 ntBASIC17.25■□□□□ 0.35
CXCL12P48061 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CXCL12P48061 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CXCL12P48061 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CXCL12P48061 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC17.25■□□□□ 0.35
CXCL12P48061 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CXCL12P48061 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms