Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.14■□□□□ 0.33
SHMT2P34897 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SHMT2P34897 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SHMT2P34897 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SHMT2P34897 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SHMT2P34897 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17.14■□□□□ 0.33
SHMT2P34897 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
SHMT2P34897 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
SHMT2P34897 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
SHMT2P34897 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
SHMT2P34897 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
SHMT2P34897 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHMT2P34897 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SHMT2P34897 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHMT2P34897 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHMT2P34897 AD000864.1-201ENST00000624076 2295 ntBASIC17.13■□□□□ 0.33
SHMT2P34897 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
SHMT2P34897 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SHMT2P34897 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.13■□□□□ 0.33
SHMT2P34897 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHMT2P34897 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHMT2P34897 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SHMT2P34897 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHMT2P34897 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHMT2P34897 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC17.13■□□□□ 0.33
SHMT2P34897 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHMT2P34897 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC17.13■□□□□ 0.33
SHMT2P34897 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC17.13■□□□□ 0.33
SHMT2P34897 FAAHP1-202ENST00000446499 1238 ntBASIC17.13■□□□□ 0.33
SHMT2P34897 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC17.13■□□□□ 0.33
SHMT2P34897 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC17.13■□□□□ 0.33
SHMT2P34897 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC17.13■□□□□ 0.33
SHMT2P34897 COX5A-202ENST00000562233 441 ntTSL 3 BASIC17.13■□□□□ 0.33
SHMT2P34897 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC17.13■□□□□ 0.33
SHMT2P34897 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SHMT2P34897 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SHMT2P34897 REXO1L6P-202ENST00000619970 1078 ntBASIC17.13■□□□□ 0.33
SHMT2P34897 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
SHMT2P34897 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHMT2P34897 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.13■□□□□ 0.33
SHMT2P34897 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC17.13■□□□□ 0.33
SHMT2P34897 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHMT2P34897 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC17.13■□□□□ 0.33
SHMT2P34897 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHMT2P34897 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
SHMT2P34897 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
SHMT2P34897 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHMT2P34897 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHMT2P34897 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHMT2P34897 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHMT2P34897 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SHMT2P34897 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHMT2P34897 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SHMT2P34897 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
SHMT2P34897 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
SHMT2P34897 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SHMT2P34897 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC17.12■□□□□ 0.33
SHMT2P34897 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
SHMT2P34897 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHMT2P34897 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
SHMT2P34897 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
SHMT2P34897 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHMT2P34897 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
SHMT2P34897 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.12■□□□□ 0.33
SHMT2P34897 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SHMT2P34897 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SHMT2P34897 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHMT2P34897 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHMT2P34897 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHMT2P34897 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SHMT2P34897 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SHMT2P34897 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC17.12■□□□□ 0.33
SHMT2P34897 SRP19-202ENST00000445150 833 ntTSL 2 BASIC17.12■□□□□ 0.33
SHMT2P34897 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC17.12■□□□□ 0.33
SHMT2P34897 AC132008.2-207ENST00000454517 770 ntBASIC17.12■□□□□ 0.33
SHMT2P34897 SAPCD2P3-201ENST00000455031 850 ntBASIC17.12■□□□□ 0.33
SHMT2P34897 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC17.12■□□□□ 0.33
SHMT2P34897 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SHMT2P34897 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SHMT2P34897 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC17.12■□□□□ 0.33
SHMT2P34897 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.12■□□□□ 0.33
SHMT2P34897 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHMT2P34897 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHMT2P34897 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHMT2P34897 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHMT2P34897 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHMT2P34897 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.12■□□□□ 0.33
SHMT2P34897 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SHMT2P34897 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SHMT2P34897 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHMT2P34897 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHMT2P34897 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.11■□□□□ 0.33
SHMT2P34897 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHMT2P34897 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
SHMT2P34897 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.11■□□□□ 0.33
SHMT2P34897 AC022211.2-201ENST00000585075 2527 ntBASIC17.11■□□□□ 0.33
SHMT2P34897 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHMT2P34897 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SHMT2P34897 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SHMT2P34897 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms