Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
BDNFP23560 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC18.41■□□□□ 0.54
BDNFP23560 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
BDNFP23560 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC18.41■□□□□ 0.54
BDNFP23560 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC18.41■□□□□ 0.54
BDNFP23560 KRT18P27-201ENST00000427733 1299 ntBASIC18.41■□□□□ 0.54
BDNFP23560 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC18.41■□□□□ 0.54
BDNFP23560 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC18.41■□□□□ 0.54
BDNFP23560 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC18.41■□□□□ 0.54
BDNFP23560 RPS29-206ENST00000557111 488 ntTSL 2 BASIC18.41■□□□□ 0.54
BDNFP23560 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
BDNFP23560 AL356488.2-201ENST00000602755 427 ntBASIC18.41■□□□□ 0.54
BDNFP23560 AL139327.4-201ENST00000612362 153 ntBASIC18.41■□□□□ 0.54
BDNFP23560 AC004706.3-202ENST00000621574 984 ntBASIC18.41■□□□□ 0.54
BDNFP23560 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
BDNFP23560 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
BDNFP23560 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
BDNFP23560 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
BDNFP23560 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC18.41■□□□□ 0.54
BDNFP23560 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
BDNFP23560 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
BDNFP23560 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
BDNFP23560 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
BDNFP23560 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.4■□□□□ 0.54
BDNFP23560 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC18.4■□□□□ 0.54
BDNFP23560 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
BDNFP23560 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
BDNFP23560 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
BDNFP23560 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
BDNFP23560 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
BDNFP23560 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
BDNFP23560 AC046185.3-201ENST00000623228 1824 ntBASIC18.4■□□□□ 0.54
BDNFP23560 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
BDNFP23560 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC18.4■□□□□ 0.54
BDNFP23560 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
BDNFP23560 AC134043.2-201ENST00000624206 2238 ntBASIC18.4■□□□□ 0.54
BDNFP23560 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
BDNFP23560 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
BDNFP23560 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
BDNFP23560 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC18.4■□□□□ 0.54
BDNFP23560 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
BDNFP23560 AC073621.1-201ENST00000392730 636 ntBASIC18.4■□□□□ 0.54
BDNFP23560 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
BDNFP23560 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC18.4■□□□□ 0.54
BDNFP23560 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
BDNFP23560 RNA5SP415-201ENST00000517246 115 ntBASIC18.4■□□□□ 0.54
BDNFP23560 AC106730.1-201ENST00000566722 1090 ntBASIC18.4■□□□□ 0.54
BDNFP23560 AL671883.3-201ENST00000603274 991 ntBASIC18.4■□□□□ 0.54
BDNFP23560 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
BDNFP23560 AC117500.6-201ENST00000624871 588 ntBASIC18.4■□□□□ 0.54
BDNFP23560 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.4■□□□□ 0.54
BDNFP23560 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
BDNFP23560 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
BDNFP23560 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
BDNFP23560 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
BDNFP23560 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
BDNFP23560 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC18.4■□□□□ 0.54
BDNFP23560 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.4■□□□□ 0.54
BDNFP23560 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
BDNFP23560 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC18.4■□□□□ 0.54
BDNFP23560 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC18.4■□□□□ 0.54
BDNFP23560 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
BDNFP23560 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC18.39■□□□□ 0.54
BDNFP23560 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
BDNFP23560 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.39■□□□□ 0.54
BDNFP23560 GATB-213ENST00000515812 1893 ntTSL 5 BASIC18.39■□□□□ 0.54
BDNFP23560 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
BDNFP23560 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
BDNFP23560 AC006504.4-201ENST00000592118 1568 ntBASIC18.39■□□□□ 0.53
BDNFP23560 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
BDNFP23560 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC18.39■□□□□ 0.53
BDNFP23560 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
BDNFP23560 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
BDNFP23560 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
BDNFP23560 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC18.39■□□□□ 0.53
BDNFP23560 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
BDNFP23560 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
BDNFP23560 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
BDNFP23560 CD63-204ENST00000546939 779 ntTSL 3 BASIC18.39■□□□□ 0.53
BDNFP23560 MIR1199-201ENST00000621445 119 ntBASIC18.39■□□□□ 0.53
BDNFP23560 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC18.39■□□□□ 0.53
BDNFP23560 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
BDNFP23560 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC18.39■□□□□ 0.53
BDNFP23560 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
BDNFP23560 AC104109.2-201ENST00000602919 1418 ntBASIC18.39■□□□□ 0.53
BDNFP23560 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
BDNFP23560 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.39■□□□□ 0.53
BDNFP23560 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC18.39■□□□□ 0.53
BDNFP23560 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
BDNFP23560 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
BDNFP23560 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
BDNFP23560 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC18.38■□□□□ 0.53
BDNFP23560 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
BDNFP23560 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC18.38■□□□□ 0.53
BDNFP23560 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
BDNFP23560 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
BDNFP23560 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
BDNFP23560 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
BDNFP23560 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
BDNFP23560 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms