Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC20.2■□□□□ 0.82
COL2A1P02458 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL2A1P02458 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
COL2A1P02458 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL2A1P02458 EGFEM1P-202ENST00000431685 1563 ntBASIC20.2■□□□□ 0.82
COL2A1P02458 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC20.2■□□□□ 0.82
COL2A1P02458 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC20.2■□□□□ 0.82
COL2A1P02458 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
COL2A1P02458 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
COL2A1P02458 MIR4515-201ENST00000584082 81 ntBASIC20.2■□□□□ 0.82
COL2A1P02458 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL2A1P02458 BSG-214ENST00000614867 960 ntTSL 3 BASIC20.2■□□□□ 0.82
COL2A1P02458 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC20.2■□□□□ 0.82
COL2A1P02458 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL2A1P02458 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL2A1P02458 COMP-202ENST00000425807 2292 ntTSL 2 BASIC20.2■□□□□ 0.82
COL2A1P02458 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL2A1P02458 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL2A1P02458 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL2A1P02458 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL2A1P02458 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL2A1P02458 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC20.19■□□□□ 0.82
COL2A1P02458 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC20.19■□□□□ 0.82
COL2A1P02458 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL2A1P02458 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC20.19■□□□□ 0.82
COL2A1P02458 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC20.19■□□□□ 0.82
COL2A1P02458 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC20.19■□□□□ 0.82
COL2A1P02458 NMU-203ENST00000507338 658 ntTSL 3 BASIC20.19■□□□□ 0.82
COL2A1P02458 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL2A1P02458 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL2A1P02458 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL2A1P02458 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
COL2A1P02458 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC20.19■□□□□ 0.82
COL2A1P02458 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC20.19■□□□□ 0.82
COL2A1P02458 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL2A1P02458 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL2A1P02458 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
COL2A1P02458 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL2A1P02458 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL2A1P02458 AC087289.5-201ENST00000586076 3175 ntBASIC20.19■□□□□ 0.82
COL2A1P02458 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC20.18■□□□□ 0.82
COL2A1P02458 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
COL2A1P02458 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
COL2A1P02458 RN7SL589P-201ENST00000481268 310 ntBASIC20.18■□□□□ 0.82
COL2A1P02458 HLA-J-203ENST00000494367 1087 ntBASIC20.18■□□□□ 0.82
COL2A1P02458 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC20.18■□□□□ 0.82
COL2A1P02458 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC20.18■□□□□ 0.82
COL2A1P02458 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC20.18■□□□□ 0.82
COL2A1P02458 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC20.18■□□□□ 0.82
COL2A1P02458 LSM12-202ENST00000585388 942 ntTSL 3 BASIC20.18■□□□□ 0.82
COL2A1P02458 AC093028.1-201ENST00000622998 982 ntBASIC20.18■□□□□ 0.82
COL2A1P02458 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL2A1P02458 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL2A1P02458 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL2A1P02458 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL2A1P02458 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL2A1P02458 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
COL2A1P02458 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL2A1P02458 AL627223.1-201ENST00000416693 442 ntBASIC20.18■□□□□ 0.82
COL2A1P02458 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC20.18■□□□□ 0.82
COL2A1P02458 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
COL2A1P02458 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC20.18■□□□□ 0.82
COL2A1P02458 INO80E-210ENST00000567705 880 ntTSL 3 BASIC20.18■□□□□ 0.82
COL2A1P02458 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL2A1P02458 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL2A1P02458 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL2A1P02458 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC20.17■□□□□ 0.82
COL2A1P02458 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL2A1P02458 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL2A1P02458 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
COL2A1P02458 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC20.17■□□□□ 0.82
COL2A1P02458 AC012317.2-201ENST00000623305 2251 ntBASIC20.17■□□□□ 0.82
COL2A1P02458 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL2A1P02458 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC20.17■□□□□ 0.82
COL2A1P02458 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC20.17■□□□□ 0.82
COL2A1P02458 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL2A1P02458 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL2A1P02458 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL2A1P02458 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL2A1P02458 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
COL2A1P02458 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
COL2A1P02458 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL2A1P02458 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL2A1P02458 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
COL2A1P02458 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL2A1P02458 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC20.17■□□□□ 0.82
COL2A1P02458 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC20.17■□□□□ 0.82
COL2A1P02458 DUX4L17-201ENST00000557360 1267 ntBASIC20.17■□□□□ 0.82
COL2A1P02458 AC093520.2-201ENST00000561830 333 ntBASIC20.17■□□□□ 0.82
COL2A1P02458 AC026120.1-201ENST00000611536 926 ntBASIC20.17■□□□□ 0.82
COL2A1P02458 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL2A1P02458 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL2A1P02458 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.17■□□□□ 0.82
COL2A1P02458 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL2A1P02458 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
COL2A1P02458 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC20.16■□□□□ 0.82
COL2A1P02458 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC20.16■□□□□ 0.82
COL2A1P02458 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC20.16■□□□□ 0.82
COL2A1P02458 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL2A1P02458 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms