Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
RNF40O75150 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
RNF40O75150 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
RNF40O75150 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.9■□□□□ 0.62
RNF40O75150 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
RNF40O75150 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
RNF40O75150 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RNF40O75150 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RNF40O75150 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RNF40O75150 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RNF40O75150 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RNF40O75150 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RNF40O75150 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RNF40O75150 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RNF40O75150 AP003733.1-201ENST00000491725 852 ntBASIC18.9■□□□□ 0.62
RNF40O75150 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
RNF40O75150 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
RNF40O75150 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC18.9■□□□□ 0.62
RNF40O75150 NIFKP4-201ENST00000567275 1192 ntBASIC18.9■□□□□ 0.62
RNF40O75150 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC18.9■□□□□ 0.62
RNF40O75150 LINC01711-201ENST00000598340 967 ntBASIC18.9■□□□□ 0.62
RNF40O75150 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC18.9■□□□□ 0.62
RNF40O75150 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC18.9■□□□□ 0.62
RNF40O75150 AC068587.9-201ENST00000641814 219 ntBASIC18.9■□□□□ 0.62
RNF40O75150 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
RNF40O75150 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RNF40O75150 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RNF40O75150 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
RNF40O75150 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC18.9■□□□□ 0.62
RNF40O75150 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
RNF40O75150 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC18.89■□□□□ 0.62
RNF40O75150 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.62
RNF40O75150 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
RNF40O75150 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
RNF40O75150 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
RNF40O75150 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.62
RNF40O75150 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
RNF40O75150 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC18.89■□□□□ 0.61
RNF40O75150 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC18.89■□□□□ 0.61
RNF40O75150 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC18.89■□□□□ 0.61
RNF40O75150 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
RNF40O75150 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RNF40O75150 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC18.89■□□□□ 0.61
RNF40O75150 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
RNF40O75150 AC104819.1-201ENST00000504587 486 ntBASIC18.89■□□□□ 0.61
RNF40O75150 KRT18P31-201ENST00000506277 1292 ntBASIC18.89■□□□□ 0.61
RNF40O75150 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC18.89■□□□□ 0.61
RNF40O75150 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC18.89■□□□□ 0.61
RNF40O75150 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
RNF40O75150 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18.89■□□□□ 0.61
RNF40O75150 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC18.89■□□□□ 0.61
RNF40O75150 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
RNF40O75150 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
RNF40O75150 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC18.89■□□□□ 0.61
RNF40O75150 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RNF40O75150 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC18.89■□□□□ 0.61
RNF40O75150 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
RNF40O75150 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC18.89■□□□□ 0.61
RNF40O75150 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RNF40O75150 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNF40O75150 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
RNF40O75150 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNF40O75150 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC18.88■□□□□ 0.61
RNF40O75150 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNF40O75150 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.88■□□□□ 0.61
RNF40O75150 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC18.88■□□□□ 0.61
RNF40O75150 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNF40O75150 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
RNF40O75150 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC18.88■□□□□ 0.61
RNF40O75150 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNF40O75150 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNF40O75150 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC18.88■□□□□ 0.61
RNF40O75150 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC18.88■□□□□ 0.61
RNF40O75150 MIR564-202ENST00000385049 94 ntBASIC18.88■□□□□ 0.61
RNF40O75150 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
RNF40O75150 AC079781.3-201ENST00000449110 356 ntBASIC18.88■□□□□ 0.61
RNF40O75150 AC090616.6-201ENST00000582640 721 ntBASIC18.88■□□□□ 0.61
RNF40O75150 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC18.88■□□□□ 0.61
RNF40O75150 AC104692.2-201ENST00000603054 253 ntBASIC18.88■□□□□ 0.61
RNF40O75150 AL390719.2-201ENST00000606993 987 ntBASIC18.88■□□□□ 0.61
RNF40O75150 IGHV3-41-201ENST00000613121 348 ntBASIC18.88■□□□□ 0.61
RNF40O75150 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC18.88■□□□□ 0.61
RNF40O75150 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNF40O75150 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
RNF40O75150 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC18.88■□□□□ 0.61
RNF40O75150 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
RNF40O75150 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
RNF40O75150 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
RNF40O75150 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
RNF40O75150 AL096828.2-201ENST00000567259 1965 ntBASIC18.88■□□□□ 0.61
RNF40O75150 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNF40O75150 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNF40O75150 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNF40O75150 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNF40O75150 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF40O75150 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
RNF40O75150 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC18.87■□□□□ 0.61
RNF40O75150 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF40O75150 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC18.87■□□□□ 0.61
RNF40O75150 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms