Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC19.58■□□□□ 0.72
MSH4O15457 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC19.58■□□□□ 0.72
MSH4O15457 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
MSH4O15457 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC19.57■□□□□ 0.72
MSH4O15457 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
MSH4O15457 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC19.57■□□□□ 0.72
MSH4O15457 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC19.57■□□□□ 0.72
MSH4O15457 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
MSH4O15457 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
MSH4O15457 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
MSH4O15457 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
MSH4O15457 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
MSH4O15457 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
MSH4O15457 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
MSH4O15457 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
MSH4O15457 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
MSH4O15457 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC19.57■□□□□ 0.72
MSH4O15457 INIP-202ENST00000374236 874 ntTSL 2 BASIC19.57■□□□□ 0.72
MSH4O15457 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC19.57■□□□□ 0.72
MSH4O15457 ELK2BP-201ENST00000415014 1224 ntBASIC19.57■□□□□ 0.72
MSH4O15457 AL590627.1-203ENST00000421194 1026 ntBASIC19.57■□□□□ 0.72
MSH4O15457 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC19.57■□□□□ 0.72
MSH4O15457 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
MSH4O15457 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC19.57■□□□□ 0.72
MSH4O15457 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC19.57■□□□□ 0.72
MSH4O15457 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC19.57■□□□□ 0.72
MSH4O15457 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC19.57■□□□□ 0.72
MSH4O15457 BX640515.1-201ENST00000617215 977 ntBASIC19.57■□□□□ 0.72
MSH4O15457 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC19.57■□□□□ 0.72
MSH4O15457 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.57■□□□□ 0.72
MSH4O15457 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
MSH4O15457 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
MSH4O15457 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC19.57■□□□□ 0.72
MSH4O15457 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
MSH4O15457 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
MSH4O15457 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
MSH4O15457 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC19.57■□□□□ 0.72
MSH4O15457 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
MSH4O15457 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
MSH4O15457 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC19.56■□□□□ 0.72
MSH4O15457 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC19.56■□□□□ 0.72
MSH4O15457 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
MSH4O15457 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
MSH4O15457 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC19.56■□□□□ 0.72
MSH4O15457 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
MSH4O15457 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC19.56■□□□□ 0.72
MSH4O15457 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
MSH4O15457 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
MSH4O15457 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC19.56■□□□□ 0.72
MSH4O15457 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC19.56■□□□□ 0.72
MSH4O15457 IGHV3-22-201ENST00000520721 359 ntBASIC19.56■□□□□ 0.72
MSH4O15457 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
MSH4O15457 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
MSH4O15457 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC19.56■□□□□ 0.72
MSH4O15457 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
MSH4O15457 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
MSH4O15457 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
MSH4O15457 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
MSH4O15457 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
MSH4O15457 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
MSH4O15457 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC19.56■□□□□ 0.72
MSH4O15457 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC19.55■□□□□ 0.72
MSH4O15457 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
MSH4O15457 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
MSH4O15457 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
MSH4O15457 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC19.55■□□□□ 0.72
MSH4O15457 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC19.55■□□□□ 0.72
MSH4O15457 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC19.55■□□□□ 0.72
MSH4O15457 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
MSH4O15457 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
MSH4O15457 AP000347.1-202ENST00000435868 847 ntBASIC19.55■□□□□ 0.72
MSH4O15457 AC098831.1-202ENST00000438821 336 ntBASIC19.55■□□□□ 0.72
MSH4O15457 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
MSH4O15457 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC19.55■□□□□ 0.72
MSH4O15457 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC19.55■□□□□ 0.72
MSH4O15457 RPS29-206ENST00000557111 488 ntTSL 2 BASIC19.55■□□□□ 0.72
MSH4O15457 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC19.55■□□□□ 0.72
MSH4O15457 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC19.55■□□□□ 0.72
MSH4O15457 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
MSH4O15457 AL356488.2-201ENST00000602755 427 ntBASIC19.55■□□□□ 0.72
MSH4O15457 AC120114.3-201ENST00000611923 658 ntBASIC19.55■□□□□ 0.72
MSH4O15457 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC19.55■□□□□ 0.72
MSH4O15457 AC117500.6-201ENST00000624871 588 ntBASIC19.55■□□□□ 0.72
MSH4O15457 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
MSH4O15457 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC19.55■□□□□ 0.72
MSH4O15457 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
MSH4O15457 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC19.55■□□□□ 0.72
MSH4O15457 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
MSH4O15457 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
MSH4O15457 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC19.55■□□□□ 0.72
MSH4O15457 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
MSH4O15457 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
MSH4O15457 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
MSH4O15457 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
MSH4O15457 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
MSH4O15457 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
MSH4O15457 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
MSH4O15457 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
MSH4O15457 AC005332.8-201ENST00000622750 2735 ntBASIC19.54■□□□□ 0.72
MSH4O15457 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms