Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC21.97■■□□□ 1.11
NPHP1O15259 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC21.97■■□□□ 1.11
NPHP1O15259 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC21.97■■□□□ 1.11
NPHP1O15259 AC010507.1-201ENST00000633895 436 ntBASIC21.97■■□□□ 1.11
NPHP1O15259 AL805961.1-202ENST00000641562 540 ntBASIC21.97■■□□□ 1.11
NPHP1O15259 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC21.97■■□□□ 1.11
NPHP1O15259 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
NPHP1O15259 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC21.97■■□□□ 1.11
NPHP1O15259 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
NPHP1O15259 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
NPHP1O15259 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
NPHP1O15259 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
NPHP1O15259 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
NPHP1O15259 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
NPHP1O15259 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC21.96■■□□□ 1.11
NPHP1O15259 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
NPHP1O15259 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
NPHP1O15259 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC21.96■■□□□ 1.11
NPHP1O15259 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC21.96■■□□□ 1.11
NPHP1O15259 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
NPHP1O15259 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC21.96■■□□□ 1.11
NPHP1O15259 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC21.96■■□□□ 1.11
NPHP1O15259 SYS1-203ENST00000414310 795 ntTSL 3 BASIC21.96■■□□□ 1.11
NPHP1O15259 FAM58CP-201ENST00000435741 640 ntBASIC21.96■■□□□ 1.11
NPHP1O15259 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
NPHP1O15259 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC21.96■■□□□ 1.11
NPHP1O15259 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC21.96■■□□□ 1.11
NPHP1O15259 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC21.96■■□□□ 1.11
NPHP1O15259 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
NPHP1O15259 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
NPHP1O15259 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
NPHP1O15259 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
NPHP1O15259 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
NPHP1O15259 AL031598.1-201ENST00000561511 1773 ntBASIC21.96■■□□□ 1.11
NPHP1O15259 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
NPHP1O15259 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
NPHP1O15259 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
NPHP1O15259 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
NPHP1O15259 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC21.96■■□□□ 1.11
NPHP1O15259 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
NPHP1O15259 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
NPHP1O15259 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
NPHP1O15259 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC21.96■■□□□ 1.11
NPHP1O15259 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
NPHP1O15259 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
NPHP1O15259 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC21.95■■□□□ 1.11
NPHP1O15259 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
NPHP1O15259 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
NPHP1O15259 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
NPHP1O15259 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
NPHP1O15259 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
NPHP1O15259 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC21.95■■□□□ 1.1
NPHP1O15259 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
NPHP1O15259 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
NPHP1O15259 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC21.95■■□□□ 1.1
NPHP1O15259 NEK7-201ENST00000367383 586 ntTSL 2 BASIC21.95■■□□□ 1.1
NPHP1O15259 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
NPHP1O15259 PTCHD3P3-201ENST00000403073 906 ntBASIC21.95■■□□□ 1.1
NPHP1O15259 IGLL3P-201ENST00000412472 434 ntBASIC21.95■■□□□ 1.1
NPHP1O15259 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC21.95■■□□□ 1.1
NPHP1O15259 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC21.95■■□□□ 1.1
NPHP1O15259 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC21.95■■□□□ 1.1
NPHP1O15259 GGTLC5P-201ENST00000617623 998 ntBASIC21.95■■□□□ 1.1
NPHP1O15259 NEFHP1-201ENST00000412845 2629 ntBASIC21.95■■□□□ 1.1
NPHP1O15259 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC21.95■■□□□ 1.1
NPHP1O15259 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
NPHP1O15259 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
NPHP1O15259 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
NPHP1O15259 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC21.95■■□□□ 1.1
NPHP1O15259 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
NPHP1O15259 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
NPHP1O15259 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC21.95■■□□□ 1.1
NPHP1O15259 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
NPHP1O15259 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
NPHP1O15259 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC21.95■■□□□ 1.1
NPHP1O15259 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC21.94■■□□□ 1.1
NPHP1O15259 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
NPHP1O15259 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC21.94■■□□□ 1.1
NPHP1O15259 AL096828.2-201ENST00000567259 1965 ntBASIC21.94■■□□□ 1.1
NPHP1O15259 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
NPHP1O15259 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC21.94■■□□□ 1.1
NPHP1O15259 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
NPHP1O15259 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC21.94■■□□□ 1.1
NPHP1O15259 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
NPHP1O15259 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
NPHP1O15259 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
NPHP1O15259 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC21.94■■□□□ 1.1
NPHP1O15259 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC21.94■■□□□ 1.1
NPHP1O15259 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC21.94■■□□□ 1.1
NPHP1O15259 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC21.94■■□□□ 1.1
NPHP1O15259 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC21.94■■□□□ 1.1
NPHP1O15259 PUS1-205ENST00000535067 838 ntTSL 3 BASIC21.94■■□□□ 1.1
NPHP1O15259 KRT19P2-202ENST00000557173 1012 ntBASIC21.94■■□□□ 1.1
NPHP1O15259 AC096734.2-201ENST00000562054 433 ntBASIC21.94■■□□□ 1.1
NPHP1O15259 AL031432.2-201ENST00000566714 459 ntBASIC21.94■■□□□ 1.1
NPHP1O15259 AL928711.1-201ENST00000570165 459 ntBASIC21.94■■□□□ 1.1
NPHP1O15259 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC21.94■■□□□ 1.1
NPHP1O15259 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC21.94■■□□□ 1.1
NPHP1O15259 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC21.94■■□□□ 1.1
NPHP1O15259 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC21.94■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms