Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 UBALD1-205ENST00000590891 2641 ntBASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHMP1AQ9HD42 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 AC009947.2-201ENST00000444014 672 ntBASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 DUTP2-201ENST00000519164 463 ntBASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHMP1AQ9HD42 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 TK2-221ENST00000620035 5060 ntTSL 2 BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 SNORA78-201ENST00000459373 127 ntBASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 EGLN1P1-201ENST00000531623 762 ntBASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 ETFA-216ENST00000560726 942 ntTSL 3 BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 AL512604.3-201ENST00000569583 964 ntBASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 AC116407.2-201ENST00000613639 860 ntBASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 AC100803.2-201ENST00000562459 1963 ntBASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CHMP1AQ9HD42 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms