Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC17.37■□□□□ 0.37
TRIM39Q9HCM9 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC17.37■□□□□ 0.37
TRIM39Q9HCM9 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC17.37■□□□□ 0.37
TRIM39Q9HCM9 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC17.37■□□□□ 0.37
TRIM39Q9HCM9 CALM3-211ENST00000598871 561 ntTSL 4 BASIC17.37■□□□□ 0.37
TRIM39Q9HCM9 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.37■□□□□ 0.37
TRIM39Q9HCM9 AC073592.5-201ENST00000624854 528 ntBASIC17.37■□□□□ 0.37
TRIM39Q9HCM9 VPS51-217ENST00000639871 243 ntTSL 5 BASIC17.37■□□□□ 0.37
TRIM39Q9HCM9 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM39Q9HCM9 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
TRIM39Q9HCM9 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM39Q9HCM9 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM39Q9HCM9 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM39Q9HCM9 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM39Q9HCM9 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM39Q9HCM9 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC17.37■□□□□ 0.37
TRIM39Q9HCM9 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC17.37■□□□□ 0.37
TRIM39Q9HCM9 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM39Q9HCM9 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.36■□□□□ 0.37
TRIM39Q9HCM9 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM39Q9HCM9 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM39Q9HCM9 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM39Q9HCM9 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM39Q9HCM9 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.36■□□□□ 0.37
TRIM39Q9HCM9 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM39Q9HCM9 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.36■□□□□ 0.37
TRIM39Q9HCM9 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM39Q9HCM9 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.36■□□□□ 0.37
TRIM39Q9HCM9 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM39Q9HCM9 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM39Q9HCM9 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM39Q9HCM9 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM39Q9HCM9 MYCLP1-201ENST00000372451 1075 ntBASIC17.36■□□□□ 0.37
TRIM39Q9HCM9 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM39Q9HCM9 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM39Q9HCM9 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
TRIM39Q9HCM9 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM39Q9HCM9 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM39Q9HCM9 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
TRIM39Q9HCM9 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.36■□□□□ 0.37
TRIM39Q9HCM9 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC17.36■□□□□ 0.37
TRIM39Q9HCM9 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM39Q9HCM9 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.36■□□□□ 0.37
TRIM39Q9HCM9 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM39Q9HCM9 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM39Q9HCM9 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
TRIM39Q9HCM9 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.35■□□□□ 0.37
TRIM39Q9HCM9 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM39Q9HCM9 AL356309.3-201ENST00000624132 1934 ntBASIC17.35■□□□□ 0.37
TRIM39Q9HCM9 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM39Q9HCM9 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.35■□□□□ 0.37
TRIM39Q9HCM9 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM39Q9HCM9 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM39Q9HCM9 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM39Q9HCM9 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM39Q9HCM9 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM39Q9HCM9 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC17.35■□□□□ 0.37
TRIM39Q9HCM9 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC17.35■□□□□ 0.37
TRIM39Q9HCM9 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC17.35■□□□□ 0.37
TRIM39Q9HCM9 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM39Q9HCM9 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC17.35■□□□□ 0.37
TRIM39Q9HCM9 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
TRIM39Q9HCM9 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
TRIM39Q9HCM9 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC17.35■□□□□ 0.37
TRIM39Q9HCM9 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM39Q9HCM9 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC17.35■□□□□ 0.37
TRIM39Q9HCM9 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM39Q9HCM9 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM39Q9HCM9 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM39Q9HCM9 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
TRIM39Q9HCM9 AC079776.2-201ENST00000641154 1609 ntBASIC17.35■□□□□ 0.37
TRIM39Q9HCM9 AC132938.5-201ENST00000624980 1813 ntBASIC17.35■□□□□ 0.37
TRIM39Q9HCM9 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM39Q9HCM9 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
TRIM39Q9HCM9 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
TRIM39Q9HCM9 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM39Q9HCM9 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM39Q9HCM9 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM39Q9HCM9 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
TRIM39Q9HCM9 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM39Q9HCM9 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM39Q9HCM9 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM39Q9HCM9 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
TRIM39Q9HCM9 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM39Q9HCM9 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC17.34■□□□□ 0.37
TRIM39Q9HCM9 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM39Q9HCM9 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC17.34■□□□□ 0.37
TRIM39Q9HCM9 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
TRIM39Q9HCM9 HIST2H3DP1-201ENST00000401004 416 ntBASIC17.34■□□□□ 0.37
TRIM39Q9HCM9 AC026396.1-201ENST00000419388 421 ntBASIC17.34■□□□□ 0.37
TRIM39Q9HCM9 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM39Q9HCM9 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
TRIM39Q9HCM9 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC17.34■□□□□ 0.37
TRIM39Q9HCM9 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM39Q9HCM9 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
TRIM39Q9HCM9 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM39Q9HCM9 AP002469.2-201ENST00000531724 424 ntBASIC17.34■□□□□ 0.37
TRIM39Q9HCM9 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
TRIM39Q9HCM9 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
TRIM39Q9HCM9 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms