Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NKX3-1Q99801 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC15.31■□□□□ 0.04
NKX3-1Q99801 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NKX3-1Q99801 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NKX3-1Q99801 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NKX3-1Q99801 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
NKX3-1Q99801 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
NKX3-1Q99801 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NKX3-1Q99801 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NKX3-1Q99801 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NKX3-1Q99801 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
NKX3-1Q99801 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
NKX3-1Q99801 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NKX3-1Q99801 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
NKX3-1Q99801 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
NKX3-1Q99801 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC15.3■□□□□ 0.04
NKX3-1Q99801 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC15.3■□□□□ 0.04
NKX3-1Q99801 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NKX3-1Q99801 SLC25A3P1-201ENST00000443844 931 ntBASIC15.3■□□□□ 0.04
NKX3-1Q99801 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC15.3■□□□□ 0.04
NKX3-1Q99801 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
NKX3-1Q99801 TK2-213ENST00000563369 882 ntTSL 5 BASIC15.3■□□□□ 0.04
NKX3-1Q99801 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
NKX3-1Q99801 PCDHB19P-201ENST00000570871 2371 ntBASIC15.3■□□□□ 0.04
NKX3-1Q99801 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
NKX3-1Q99801 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC15.3■□□□□ 0.04
NKX3-1Q99801 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
NKX3-1Q99801 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
NKX3-1Q99801 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
NKX3-1Q99801 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
NKX3-1Q99801 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
NKX3-1Q99801 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
NKX3-1Q99801 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC15.3■□□□□ 0.04
NKX3-1Q99801 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NKX3-1Q99801 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
NKX3-1Q99801 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC15.3■□□□□ 0.04
NKX3-1Q99801 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
NKX3-1Q99801 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NKX3-1Q99801 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
NKX3-1Q99801 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
NKX3-1Q99801 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC15.29■□□□□ 0.04
NKX3-1Q99801 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
NKX3-1Q99801 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
NKX3-1Q99801 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NKX3-1Q99801 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
NKX3-1Q99801 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
NKX3-1Q99801 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC15.29■□□□□ 0.04
NKX3-1Q99801 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC15.29■□□□□ 0.04
NKX3-1Q99801 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
NKX3-1Q99801 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NKX3-1Q99801 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
NKX3-1Q99801 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NKX3-1Q99801 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
NKX3-1Q99801 AC113347.1-201ENST00000413321 391 ntBASIC15.29■□□□□ 0.04
NKX3-1Q99801 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC15.29■□□□□ 0.04
NKX3-1Q99801 PVRIG2P-201ENST00000435460 978 ntBASIC15.29■□□□□ 0.04
NKX3-1Q99801 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC15.29■□□□□ 0.04
NKX3-1Q99801 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC15.29■□□□□ 0.04
NKX3-1Q99801 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC15.29■□□□□ 0.04
NKX3-1Q99801 GCSHP2-201ENST00000560971 527 ntBASIC15.29■□□□□ 0.04
NKX3-1Q99801 AL023973.1-201ENST00000624619 620 ntBASIC15.29■□□□□ 0.04
NKX3-1Q99801 FLJ38576-201ENST00000623820 2459 ntBASIC15.29■□□□□ 0.04
NKX3-1Q99801 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC15.29■□□□□ 0.04
NKX3-1Q99801 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
NKX3-1Q99801 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
NKX3-1Q99801 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NKX3-1Q99801 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC15.29■□□□□ 0.04
NKX3-1Q99801 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
NKX3-1Q99801 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NKX3-1Q99801 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NKX3-1Q99801 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC15.29■□□□□ 0.04
NKX3-1Q99801 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
NKX3-1Q99801 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC15.28■□□□□ 0.04
NKX3-1Q99801 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
NKX3-1Q99801 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NKX3-1Q99801 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
NKX3-1Q99801 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
NKX3-1Q99801 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC15.28■□□□□ 0.04
NKX3-1Q99801 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
NKX3-1Q99801 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC15.28■□□□□ 0.04
NKX3-1Q99801 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NKX3-1Q99801 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
NKX3-1Q99801 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NKX3-1Q99801 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
NKX3-1Q99801 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC15.28■□□□□ 0.04
NKX3-1Q99801 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NKX3-1Q99801 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC15.28■□□□□ 0.04
NKX3-1Q99801 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NKX3-1Q99801 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
NKX3-1Q99801 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NKX3-1Q99801 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
NKX3-1Q99801 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
NKX3-1Q99801 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NKX3-1Q99801 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC15.28■□□□□ 0.04
NKX3-1Q99801 CD70-202ENST00000423145 881 ntTSL 2 BASIC15.28■□□□□ 0.04
NKX3-1Q99801 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC15.28■□□□□ 0.04
NKX3-1Q99801 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC15.28■□□□□ 0.04
NKX3-1Q99801 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC15.28■□□□□ 0.04
NKX3-1Q99801 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC15.28■□□□□ 0.04
NKX3-1Q99801 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms