Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SF3A1Q15459 AD000864.1-201ENST00000624076 2295 ntBASIC20.23■□□□□ 0.83
SF3A1Q15459 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SF3A1Q15459 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SF3A1Q15459 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SF3A1Q15459 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SF3A1Q15459 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SF3A1Q15459 GUK1-204ENST00000366721 689 ntTSL 3 BASIC20.23■□□□□ 0.83
SF3A1Q15459 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SF3A1Q15459 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SF3A1Q15459 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC20.23■□□□□ 0.83
SF3A1Q15459 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC20.23■□□□□ 0.83
SF3A1Q15459 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SF3A1Q15459 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SF3A1Q15459 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SF3A1Q15459 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
SF3A1Q15459 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SF3A1Q15459 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SF3A1Q15459 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC20.23■□□□□ 0.83
SF3A1Q15459 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SF3A1Q15459 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
SF3A1Q15459 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
SF3A1Q15459 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
SF3A1Q15459 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SF3A1Q15459 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
SF3A1Q15459 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SF3A1Q15459 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC20.22■□□□□ 0.83
SF3A1Q15459 BAALC-202ENST00000306391 243 ntTSL 5 BASIC20.22■□□□□ 0.83
SF3A1Q15459 BAALC-204ENST00000330955 222 ntTSL 5 BASIC20.22■□□□□ 0.83
SF3A1Q15459 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC20.22■□□□□ 0.83
SF3A1Q15459 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SF3A1Q15459 AL645929.1-201ENST00000420084 975 ntBASIC20.22■□□□□ 0.83
SF3A1Q15459 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SF3A1Q15459 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SF3A1Q15459 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SF3A1Q15459 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SF3A1Q15459 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SF3A1Q15459 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC20.22■□□□□ 0.83
SF3A1Q15459 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC20.22■□□□□ 0.83
SF3A1Q15459 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SF3A1Q15459 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SF3A1Q15459 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
SF3A1Q15459 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SF3A1Q15459 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SF3A1Q15459 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
SF3A1Q15459 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SF3A1Q15459 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC20.21■□□□□ 0.83
SF3A1Q15459 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC20.21■□□□□ 0.83
SF3A1Q15459 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SF3A1Q15459 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SF3A1Q15459 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SF3A1Q15459 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC20.21■□□□□ 0.83
SF3A1Q15459 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SF3A1Q15459 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC20.21■□□□□ 0.83
SF3A1Q15459 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC20.21■□□□□ 0.83
SF3A1Q15459 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
SF3A1Q15459 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SF3A1Q15459 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SF3A1Q15459 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SF3A1Q15459 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SF3A1Q15459 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
SF3A1Q15459 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC20.21■□□□□ 0.83
SF3A1Q15459 SAPCD2P2-201ENST00000431719 1174 ntBASIC20.21■□□□□ 0.83
SF3A1Q15459 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC20.21■□□□□ 0.83
SF3A1Q15459 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC20.21■□□□□ 0.83
SF3A1Q15459 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC20.21■□□□□ 0.83
SF3A1Q15459 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SF3A1Q15459 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC20.21■□□□□ 0.83
SF3A1Q15459 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC20.21■□□□□ 0.83
SF3A1Q15459 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SF3A1Q15459 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
SF3A1Q15459 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SF3A1Q15459 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC20.21■□□□□ 0.83
SF3A1Q15459 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SF3A1Q15459 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
SF3A1Q15459 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC20.21■□□□□ 0.83
SF3A1Q15459 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
SF3A1Q15459 NFIC-211ENST00000641145 8399 ntBASIC20.21■□□□□ 0.83
SF3A1Q15459 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
SF3A1Q15459 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SF3A1Q15459 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SF3A1Q15459 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC20.2■□□□□ 0.82
SF3A1Q15459 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC20.2■□□□□ 0.82
SF3A1Q15459 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SF3A1Q15459 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SF3A1Q15459 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SF3A1Q15459 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC20.2■□□□□ 0.82
SF3A1Q15459 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC20.2■□□□□ 0.82
SF3A1Q15459 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC20.2■□□□□ 0.82
SF3A1Q15459 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SF3A1Q15459 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
SF3A1Q15459 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SF3A1Q15459 AC096633.1-201ENST00000422446 749 ntBASIC20.2■□□□□ 0.82
SF3A1Q15459 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC20.2■□□□□ 0.82
SF3A1Q15459 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC20.2■□□□□ 0.82
SF3A1Q15459 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC20.2■□□□□ 0.82
SF3A1Q15459 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC20.2■□□□□ 0.82
SF3A1Q15459 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SF3A1Q15459 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
SF3A1Q15459 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms