Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC17.27■□□□□ 0.36
SRP54P61011 AC117500.6-201ENST00000624871 588 ntBASIC17.27■□□□□ 0.36
SRP54P61011 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SRP54P61011 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.27■□□□□ 0.35
SRP54P61011 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
SRP54P61011 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.27■□□□□ 0.35
SRP54P61011 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
SRP54P61011 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SRP54P61011 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
SRP54P61011 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC17.27■□□□□ 0.35
SRP54P61011 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SRP54P61011 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC17.26■□□□□ 0.35
SRP54P61011 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SRP54P61011 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
SRP54P61011 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SRP54P61011 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SRP54P61011 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SRP54P61011 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SRP54P61011 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.26■□□□□ 0.35
SRP54P61011 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.26■□□□□ 0.35
SRP54P61011 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SRP54P61011 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SRP54P61011 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SRP54P61011 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
SRP54P61011 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
SRP54P61011 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SRP54P61011 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC17.26■□□□□ 0.35
SRP54P61011 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC17.26■□□□□ 0.35
SRP54P61011 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC17.26■□□□□ 0.35
SRP54P61011 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC17.26■□□□□ 0.35
SRP54P61011 POLD2P1-201ENST00000511220 997 ntBASIC17.26■□□□□ 0.35
SRP54P61011 RPS29-206ENST00000557111 488 ntTSL 2 BASIC17.26■□□□□ 0.35
SRP54P61011 CYB561-217ENST00000582997 877 ntTSL 5 BASIC17.26■□□□□ 0.35
SRP54P61011 CYGB-205ENST00000590175 830 ntTSL 3 BASIC17.26■□□□□ 0.35
SRP54P61011 AC006557.2-201ENST00000592985 1240 ntBASIC17.26■□□□□ 0.35
SRP54P61011 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC17.26■□□□□ 0.35
SRP54P61011 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
SRP54P61011 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.26■□□□□ 0.35
SRP54P61011 CAND2-206ENST00000626378 333 ntTSL 5 BASIC17.26■□□□□ 0.35
SRP54P61011 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SRP54P61011 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SRP54P61011 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.26■□□□□ 0.35
SRP54P61011 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
SRP54P61011 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SRP54P61011 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC17.26■□□□□ 0.35
SRP54P61011 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SRP54P61011 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SRP54P61011 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SRP54P61011 AC138028.4-201ENST00000564984 1845 ntBASIC17.26■□□□□ 0.35
SRP54P61011 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
SRP54P61011 AC148477.5-201ENST00000625164 1645 ntBASIC17.25■□□□□ 0.35
SRP54P61011 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SRP54P61011 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC17.25■□□□□ 0.35
SRP54P61011 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC17.25■□□□□ 0.35
SRP54P61011 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SRP54P61011 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SRP54P61011 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.25■□□□□ 0.35
SRP54P61011 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
SRP54P61011 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
SRP54P61011 SIGLEC30P-201ENST00000455569 941 ntBASIC17.25■□□□□ 0.35
SRP54P61011 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC17.25■□□□□ 0.35
SRP54P61011 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC17.25■□□□□ 0.35
SRP54P61011 TERC-201ENST00000602385 541 ntBASIC17.25■□□□□ 0.35
SRP54P61011 AL356488.2-201ENST00000602755 427 ntBASIC17.25■□□□□ 0.35
SRP54P61011 Z83851.2-201ENST00000609564 659 ntBASIC17.25■□□□□ 0.35
SRP54P61011 AL589182.2-201ENST00000619332 1049 ntBASIC17.25■□□□□ 0.35
SRP54P61011 MIR1199-201ENST00000621445 119 ntBASIC17.25■□□□□ 0.35
SRP54P61011 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.25■□□□□ 0.35
SRP54P61011 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SRP54P61011 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
SRP54P61011 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SRP54P61011 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
SRP54P61011 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SRP54P61011 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
SRP54P61011 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SRP54P61011 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC17.25■□□□□ 0.35
SRP54P61011 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
SRP54P61011 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SRP54P61011 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SRP54P61011 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SRP54P61011 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
SRP54P61011 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
SRP54P61011 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
SRP54P61011 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SRP54P61011 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SRP54P61011 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
SRP54P61011 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.24■□□□□ 0.35
SRP54P61011 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SRP54P61011 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SRP54P61011 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
SRP54P61011 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SRP54P61011 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SRP54P61011 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC17.24■□□□□ 0.35
SRP54P61011 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SRP54P61011 ABALON-201ENST00000629058 1903 ntBASIC17.24■□□□□ 0.35
SRP54P61011 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SRP54P61011 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SRP54P61011 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC17.24■□□□□ 0.35
SRP54P61011 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SRP54P61011 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms