Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC14.58□□□□□ -0.08
HOXA1P49639 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC14.58□□□□□ -0.08
HOXA1P49639 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
HOXA1P49639 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HOXA1P49639 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HOXA1P49639 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC14.57□□□□□ -0.08
HOXA1P49639 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC14.57□□□□□ -0.08
HOXA1P49639 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC14.57□□□□□ -0.08
HOXA1P49639 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXA1P49639 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC14.57□□□□□ -0.08
HOXA1P49639 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXA1P49639 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXA1P49639 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HOXA1P49639 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXA1P49639 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXA1P49639 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXA1P49639 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC14.57□□□□□ -0.08
HOXA1P49639 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HOXA1P49639 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC14.57□□□□□ -0.08
HOXA1P49639 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXA1P49639 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXA1P49639 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HOXA1P49639 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC14.57□□□□□ -0.08
HOXA1P49639 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXA1P49639 AC093010.1-201ENST00000473625 1624 ntBASIC14.57□□□□□ -0.08
HOXA1P49639 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXA1P49639 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXA1P49639 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
HOXA1P49639 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC14.57□□□□□ -0.08
HOXA1P49639 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXA1P49639 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC14.57□□□□□ -0.08
HOXA1P49639 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC14.57□□□□□ -0.08
HOXA1P49639 NAT14-202ENST00000587400 416 ntTSL 5 BASIC14.57□□□□□ -0.08
HOXA1P49639 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC14.57□□□□□ -0.08
HOXA1P49639 GRAMD4P8-201ENST00000605465 1115 ntBASIC14.57□□□□□ -0.08
HOXA1P49639 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC14.57□□□□□ -0.08
HOXA1P49639 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC14.57□□□□□ -0.08
HOXA1P49639 AC026691.1-201ENST00000602502 2017 ntBASIC14.57□□□□□ -0.08
HOXA1P49639 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXA1P49639 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC14.57□□□□□ -0.08
HOXA1P49639 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXA1P49639 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HOXA1P49639 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXA1P49639 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXA1P49639 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC14.57□□□□□ -0.08
HOXA1P49639 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HOXA1P49639 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXA1P49639 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
HOXA1P49639 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXA1P49639 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC14.57□□□□□ -0.08
HOXA1P49639 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
HOXA1P49639 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXA1P49639 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXA1P49639 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXA1P49639 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC14.57□□□□□ -0.08
HOXA1P49639 AC007950.2-201ENST00000615045 2347 ntBASIC14.57□□□□□ -0.08
HOXA1P49639 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC14.56□□□□□ -0.08
HOXA1P49639 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
HOXA1P49639 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXA1P49639 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXA1P49639 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXA1P49639 LINC00602-201ENST00000629776 2065 ntBASIC14.56□□□□□ -0.08
HOXA1P49639 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXA1P49639 LYSMD4-203ENST00000378904 2122 ntBASIC14.56□□□□□ -0.08
HOXA1P49639 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC14.56□□□□□ -0.08
HOXA1P49639 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXA1P49639 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC14.56□□□□□ -0.08
HOXA1P49639 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXA1P49639 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXA1P49639 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXA1P49639 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HOXA1P49639 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXA1P49639 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
HOXA1P49639 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC14.56□□□□□ -0.08
HOXA1P49639 FAM201B-201ENST00000458407 597 ntBASIC14.56□□□□□ -0.08
HOXA1P49639 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC14.56□□□□□ -0.08
HOXA1P49639 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
HOXA1P49639 MIR4674-201ENST00000582457 87 ntBASIC14.56□□□□□ -0.08
HOXA1P49639 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC14.56□□□□□ -0.08
HOXA1P49639 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXA1P49639 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC14.56□□□□□ -0.08
HOXA1P49639 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC14.56□□□□□ -0.08
HOXA1P49639 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC14.56□□□□□ -0.08
HOXA1P49639 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXA1P49639 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HOXA1P49639 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HOXA1P49639 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HOXA1P49639 AC105917.1-201ENST00000506637 2539 ntBASIC14.56□□□□□ -0.08
HOXA1P49639 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC14.56□□□□□ -0.08
HOXA1P49639 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
HOXA1P49639 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC14.56□□□□□ -0.08
HOXA1P49639 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HOXA1P49639 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
HOXA1P49639 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HOXA1P49639 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC14.55□□□□□ -0.08
HOXA1P49639 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HOXA1P49639 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
HOXA1P49639 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HOXA1P49639 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC14.55□□□□□ -0.08
HOXA1P49639 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms