Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC21.02■□□□□ 0.96
BRCA1P38398 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
BRCA1P38398 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
BRCA1P38398 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC21.02■□□□□ 0.96
BRCA1P38398 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC21.02■□□□□ 0.96
BRCA1P38398 COQ4-205ENST00000609948 956 ntTSL 2 BASIC21.02■□□□□ 0.96
BRCA1P38398 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.02■□□□□ 0.96
BRCA1P38398 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
BRCA1P38398 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
BRCA1P38398 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
BRCA1P38398 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC21.01■□□□□ 0.95
BRCA1P38398 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
BRCA1P38398 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
BRCA1P38398 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
BRCA1P38398 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC21.01■□□□□ 0.95
BRCA1P38398 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC21.01■□□□□ 0.95
BRCA1P38398 IGHV3-62-201ENST00000520057 340 ntBASIC21.01■□□□□ 0.95
BRCA1P38398 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC21.01■□□□□ 0.95
BRCA1P38398 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC21.01■□□□□ 0.95
BRCA1P38398 AC005412.3-201ENST00000580309 715 ntBASIC21.01■□□□□ 0.95
BRCA1P38398 AL844908.2-201ENST00000609461 460 ntBASIC21.01■□□□□ 0.95
BRCA1P38398 AC007967.4-201ENST00000614700 386 ntBASIC21.01■□□□□ 0.95
BRCA1P38398 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
BRCA1P38398 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
BRCA1P38398 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
BRCA1P38398 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC21.01■□□□□ 0.95
BRCA1P38398 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC21.01■□□□□ 0.95
BRCA1P38398 FOXO1B-201ENST00000504678 1527 ntBASIC21.01■□□□□ 0.95
BRCA1P38398 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
BRCA1P38398 RNU1-129P-201ENST00000384064 167 ntBASIC21.01■□□□□ 0.95
BRCA1P38398 HNRNPA3P1-201ENST00000401429 1139 ntBASIC21.01■□□□□ 0.95
BRCA1P38398 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
BRCA1P38398 HNRNPA3P5-201ENST00000455201 833 ntBASIC21.01■□□□□ 0.95
BRCA1P38398 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
BRCA1P38398 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC21.01■□□□□ 0.95
BRCA1P38398 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC21.01■□□□□ 0.95
BRCA1P38398 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
BRCA1P38398 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
BRCA1P38398 AC132938.2-201ENST00000579188 680 ntBASIC21.01■□□□□ 0.95
BRCA1P38398 U1.21-201ENST00000580816 167 ntBASIC21.01■□□□□ 0.95
BRCA1P38398 AC008738.7-201ENST00000609744 511 ntBASIC21.01■□□□□ 0.95
BRCA1P38398 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC21.01■□□□□ 0.95
BRCA1P38398 AL591163.1-201ENST00000641757 987 ntBASIC21.01■□□□□ 0.95
BRCA1P38398 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
BRCA1P38398 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21■□□□□ 0.95
BRCA1P38398 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC21■□□□□ 0.95
BRCA1P38398 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC21■□□□□ 0.95
BRCA1P38398 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
BRCA1P38398 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
BRCA1P38398 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC21■□□□□ 0.95
BRCA1P38398 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
BRCA1P38398 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
BRCA1P38398 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
BRCA1P38398 POR-209ENST00000439269 1858 ntTSL 2 BASIC21■□□□□ 0.95
BRCA1P38398 REXO1L11P-201ENST00000620964 1927 ntBASIC21■□□□□ 0.95
BRCA1P38398 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
BRCA1P38398 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
BRCA1P38398 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
BRCA1P38398 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC21■□□□□ 0.95
BRCA1P38398 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
BRCA1P38398 AMT-250ENST00000637682 1823 ntTSL 5 BASIC21■□□□□ 0.95
BRCA1P38398 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC21■□□□□ 0.95
BRCA1P38398 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
BRCA1P38398 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
BRCA1P38398 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC20.99■□□□□ 0.95
BRCA1P38398 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC20.99■□□□□ 0.95
BRCA1P38398 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC20.99■□□□□ 0.95
BRCA1P38398 TP53TG3HP-202ENST00000569755 579 ntBASIC20.99■□□□□ 0.95
BRCA1P38398 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC20.99■□□□□ 0.95
BRCA1P38398 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC20.99■□□□□ 0.95
BRCA1P38398 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC20.99■□□□□ 0.95
BRCA1P38398 AL020996.1-203ENST00000536896 2307 ntBASIC20.99■□□□□ 0.95
BRCA1P38398 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
BRCA1P38398 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC20.99■□□□□ 0.95
BRCA1P38398 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC20.99■□□□□ 0.95
BRCA1P38398 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
BRCA1P38398 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
BRCA1P38398 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC20.99■□□□□ 0.95
BRCA1P38398 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
BRCA1P38398 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
BRCA1P38398 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
BRCA1P38398 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
BRCA1P38398 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC20.98■□□□□ 0.95
BRCA1P38398 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC20.98■□□□□ 0.95
BRCA1P38398 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC20.98■□□□□ 0.95
BRCA1P38398 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
BRCA1P38398 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC20.98■□□□□ 0.95
BRCA1P38398 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
BRCA1P38398 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
BRCA1P38398 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
BRCA1P38398 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
BRCA1P38398 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.98■□□□□ 0.95
BRCA1P38398 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
BRCA1P38398 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC20.98■□□□□ 0.95
BRCA1P38398 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.98■□□□□ 0.95
BRCA1P38398 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.98■□□□□ 0.95
BRCA1P38398 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
BRCA1P38398 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC20.98■□□□□ 0.95
BRCA1P38398 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
BRCA1P38398 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms