Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SCN4AP35499 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SCN4AP35499 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SCN4AP35499 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SCN4AP35499 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC20.43■□□□□ 0.86
SCN4AP35499 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC20.43■□□□□ 0.86
SCN4AP35499 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
SCN4AP35499 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
SCN4AP35499 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
SCN4AP35499 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC20.43■□□□□ 0.86
SCN4AP35499 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.42■□□□□ 0.86
SCN4AP35499 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SCN4AP35499 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SCN4AP35499 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SCN4AP35499 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC20.42■□□□□ 0.86
SCN4AP35499 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
SCN4AP35499 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SCN4AP35499 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SCN4AP35499 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC20.42■□□□□ 0.86
SCN4AP35499 PGF-202ENST00000405431 666 ntTSL 5 BASIC20.42■□□□□ 0.86
SCN4AP35499 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC20.42■□□□□ 0.86
SCN4AP35499 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC20.42■□□□□ 0.86
SCN4AP35499 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC20.42■□□□□ 0.86
SCN4AP35499 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SCN4AP35499 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SCN4AP35499 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SCN4AP35499 GRAMD4P3-201ENST00000621665 1669 ntBASIC20.42■□□□□ 0.86
SCN4AP35499 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SCN4AP35499 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC20.41■□□□□ 0.86
SCN4AP35499 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC20.41■□□□□ 0.86
SCN4AP35499 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC20.41■□□□□ 0.86
SCN4AP35499 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC20.41■□□□□ 0.86
SCN4AP35499 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SCN4AP35499 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC20.41■□□□□ 0.86
SCN4AP35499 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC20.41■□□□□ 0.86
SCN4AP35499 AC007967.4-201ENST00000614700 386 ntBASIC20.41■□□□□ 0.86
SCN4AP35499 MIR6805-201ENST00000615055 62 ntBASIC20.41■□□□□ 0.86
SCN4AP35499 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC20.41■□□□□ 0.86
SCN4AP35499 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC20.41■□□□□ 0.86
SCN4AP35499 AC138969.3-201ENST00000546612 1459 ntBASIC20.41■□□□□ 0.86
SCN4AP35499 AC138932.2-201ENST00000548268 1459 ntBASIC20.41■□□□□ 0.86
SCN4AP35499 AC126755.4-201ENST00000549796 1459 ntBASIC20.41■□□□□ 0.86
SCN4AP35499 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
SCN4AP35499 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SCN4AP35499 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC20.41■□□□□ 0.86
SCN4AP35499 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC20.41■□□□□ 0.86
SCN4AP35499 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
SCN4AP35499 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SCN4AP35499 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SCN4AP35499 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
SCN4AP35499 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC20.41■□□□□ 0.86
SCN4AP35499 MPI-209ENST00000564003 1195 ntTSL 2 BASIC20.41■□□□□ 0.86
SCN4AP35499 WASH4P-201ENST00000564273 1246 ntBASIC20.41■□□□□ 0.86
SCN4AP35499 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC20.41■□□□□ 0.86
SCN4AP35499 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SCN4AP35499 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SCN4AP35499 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SCN4AP35499 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SCN4AP35499 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC20.4■□□□□ 0.86
SCN4AP35499 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SCN4AP35499 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC20.4■□□□□ 0.86
SCN4AP35499 AC005332.7-201ENST00000614046 2005 ntBASIC20.4■□□□□ 0.86
SCN4AP35499 PTGES2-AS1-201ENST00000443493 2100 ntBASIC20.4■□□□□ 0.86
SCN4AP35499 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC20.4■□□□□ 0.86
SCN4AP35499 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SCN4AP35499 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC20.4■□□□□ 0.86
SCN4AP35499 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC20.4■□□□□ 0.86
SCN4AP35499 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC20.4■□□□□ 0.86
SCN4AP35499 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
SCN4AP35499 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC20.4■□□□□ 0.86
SCN4AP35499 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC20.4■□□□□ 0.86
SCN4AP35499 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SCN4AP35499 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SCN4AP35499 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SCN4AP35499 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SCN4AP35499 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.4■□□□□ 0.86
SCN4AP35499 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC20.4■□□□□ 0.86
SCN4AP35499 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC20.4■□□□□ 0.86
SCN4AP35499 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC20.4■□□□□ 0.86
SCN4AP35499 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SCN4AP35499 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SCN4AP35499 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SCN4AP35499 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SCN4AP35499 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.39■□□□□ 0.86
SCN4AP35499 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SCN4AP35499 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
SCN4AP35499 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
SCN4AP35499 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC20.39■□□□□ 0.86
SCN4AP35499 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
SCN4AP35499 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC20.39■□□□□ 0.86
SCN4AP35499 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
SCN4AP35499 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC20.39■□□□□ 0.86
SCN4AP35499 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC20.39■□□□□ 0.86
SCN4AP35499 PRR29-204ENST00000577953 565 ntTSL 4 BASIC20.39■□□□□ 0.86
SCN4AP35499 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC20.39■□□□□ 0.86
SCN4AP35499 AC046185.3-201ENST00000623228 1824 ntBASIC20.39■□□□□ 0.86
SCN4AP35499 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
SCN4AP35499 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
SCN4AP35499 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
SCN4AP35499 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms