Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RORAP35398 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
RORAP35398 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
RORAP35398 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RORAP35398 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
RORAP35398 AC009949.1-201ENST00000623048 1830 ntBASIC16.63■□□□□ 0.25
RORAP35398 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RORAP35398 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RORAP35398 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RORAP35398 AC005332.8-201ENST00000622750 2735 ntBASIC16.63■□□□□ 0.25
RORAP35398 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
RORAP35398 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
RORAP35398 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RORAP35398 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
RORAP35398 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RORAP35398 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC16.63■□□□□ 0.25
RORAP35398 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC16.63■□□□□ 0.25
RORAP35398 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RORAP35398 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RORAP35398 AP002414.3-201ENST00000589352 1468 ntBASIC16.63■□□□□ 0.25
RORAP35398 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RORAP35398 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
RORAP35398 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.63■□□□□ 0.25
RORAP35398 AL020989.1-201ENST00000422979 469 ntBASIC16.63■□□□□ 0.25
RORAP35398 KRT18P27-201ENST00000427733 1299 ntBASIC16.63■□□□□ 0.25
RORAP35398 SLC25A6P5-201ENST00000435663 894 ntBASIC16.63■□□□□ 0.25
RORAP35398 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.63■□□□□ 0.25
RORAP35398 POLD2P1-201ENST00000511220 997 ntBASIC16.63■□□□□ 0.25
RORAP35398 AC034105.1-201ENST00000563488 319 ntBASIC16.63■□□□□ 0.25
RORAP35398 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.63■□□□□ 0.25
RORAP35398 AC006538.3-201ENST00000612495 578 ntBASIC16.63■□□□□ 0.25
RORAP35398 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
RORAP35398 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RORAP35398 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RORAP35398 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RORAP35398 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
RORAP35398 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC16.63■□□□□ 0.25
RORAP35398 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RORAP35398 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RORAP35398 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RORAP35398 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RORAP35398 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RORAP35398 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
RORAP35398 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
RORAP35398 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC16.62■□□□□ 0.25
RORAP35398 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
RORAP35398 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RORAP35398 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
RORAP35398 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RORAP35398 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
RORAP35398 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
RORAP35398 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
RORAP35398 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC16.62■□□□□ 0.25
RORAP35398 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RORAP35398 BX276092.7-203ENST00000637198 1536 ntBASIC16.62■□□□□ 0.25
RORAP35398 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RORAP35398 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RORAP35398 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.62■□□□□ 0.25
RORAP35398 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RORAP35398 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.62■□□□□ 0.25
RORAP35398 RNA5SP415-201ENST00000517246 115 ntBASIC16.62■□□□□ 0.25
RORAP35398 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC16.62■□□□□ 0.25
RORAP35398 RPS29-206ENST00000557111 488 ntTSL 2 BASIC16.62■□□□□ 0.25
RORAP35398 SDCCAG3P1-201ENST00000589292 1150 ntBASIC16.62■□□□□ 0.25
RORAP35398 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC16.62■□□□□ 0.25
RORAP35398 Z83851.2-201ENST00000609564 659 ntBASIC16.62■□□□□ 0.25
RORAP35398 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
RORAP35398 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RORAP35398 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RORAP35398 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC16.62■□□□□ 0.25
RORAP35398 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC16.62■□□□□ 0.25
RORAP35398 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
RORAP35398 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
RORAP35398 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RORAP35398 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
RORAP35398 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RORAP35398 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
RORAP35398 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
RORAP35398 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RORAP35398 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
RORAP35398 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
RORAP35398 PKD1P1-201ENST00000458669 6805 ntBASIC16.61■□□□□ 0.25
RORAP35398 FUT8-AS1-201ENST00000621019 1521 ntBASIC16.61■□□□□ 0.25
RORAP35398 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC16.61■□□□□ 0.25
RORAP35398 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RORAP35398 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RORAP35398 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RORAP35398 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
RORAP35398 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RORAP35398 LBH-204ENST00000406087 559 ntTSL 4 BASIC16.61■□□□□ 0.25
RORAP35398 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
RORAP35398 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.61■□□□□ 0.25
RORAP35398 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC16.61■□□□□ 0.25
RORAP35398 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC16.61■□□□□ 0.25
RORAP35398 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
RORAP35398 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC16.61■□□□□ 0.25
RORAP35398 AC006557.2-201ENST00000592985 1240 ntBASIC16.61■□□□□ 0.25
RORAP35398 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RORAP35398 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
RORAP35398 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms