Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC20■□□□□ 0.79
SMARCA1P28370 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC20■□□□□ 0.79
SMARCA1P28370 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SMARCA1P28370 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SMARCA1P28370 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC20■□□□□ 0.79
SMARCA1P28370 AC243591.1-201ENST00000452967 1364 ntBASIC20■□□□□ 0.79
SMARCA1P28370 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC20■□□□□ 0.79
SMARCA1P28370 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC20■□□□□ 0.79
SMARCA1P28370 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC20■□□□□ 0.79
SMARCA1P28370 SLC25A1P3-201ENST00000395415 828 ntBASIC20■□□□□ 0.79
SMARCA1P28370 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC20■□□□□ 0.79
SMARCA1P28370 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC20■□□□□ 0.79
SMARCA1P28370 IGHV3-22-201ENST00000520721 359 ntBASIC20■□□□□ 0.79
SMARCA1P28370 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC20■□□□□ 0.79
SMARCA1P28370 CD63-204ENST00000546939 779 ntTSL 3 BASIC20■□□□□ 0.79
SMARCA1P28370 RPS29-206ENST00000557111 488 ntTSL 2 BASIC20■□□□□ 0.79
SMARCA1P28370 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC20■□□□□ 0.79
SMARCA1P28370 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC20■□□□□ 0.79
SMARCA1P28370 AL356488.2-201ENST00000602755 427 ntBASIC20■□□□□ 0.79
SMARCA1P28370 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC20■□□□□ 0.79
SMARCA1P28370 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SMARCA1P28370 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC20■□□□□ 0.79
SMARCA1P28370 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
SMARCA1P28370 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC20■□□□□ 0.79
SMARCA1P28370 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC20■□□□□ 0.79
SMARCA1P28370 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
SMARCA1P28370 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
SMARCA1P28370 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SMARCA1P28370 EML3-217ENST00000531557 2509 ntTSL 5 BASIC20■□□□□ 0.79
SMARCA1P28370 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC20■□□□□ 0.79
SMARCA1P28370 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC20■□□□□ 0.79
SMARCA1P28370 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC20■□□□□ 0.79
SMARCA1P28370 AC006504.4-201ENST00000592118 1568 ntBASIC20■□□□□ 0.79
SMARCA1P28370 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SMARCA1P28370 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC19.99■□□□□ 0.79
SMARCA1P28370 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMARCA1P28370 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC19.99■□□□□ 0.79
SMARCA1P28370 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
SMARCA1P28370 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMARCA1P28370 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMARCA1P28370 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMARCA1P28370 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMARCA1P28370 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC19.99■□□□□ 0.79
SMARCA1P28370 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMARCA1P28370 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMARCA1P28370 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMARCA1P28370 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC19.99■□□□□ 0.79
SMARCA1P28370 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC19.99■□□□□ 0.79
SMARCA1P28370 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC19.99■□□□□ 0.79
SMARCA1P28370 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC19.99■□□□□ 0.79
SMARCA1P28370 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC19.99■□□□□ 0.79
SMARCA1P28370 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC19.99■□□□□ 0.79
SMARCA1P28370 AL805961.1-202ENST00000641562 540 ntBASIC19.99■□□□□ 0.79
SMARCA1P28370 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC19.99■□□□□ 0.79
SMARCA1P28370 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMARCA1P28370 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMARCA1P28370 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMARCA1P28370 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMARCA1P28370 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC19.99■□□□□ 0.79
SMARCA1P28370 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC19.99■□□□□ 0.79
SMARCA1P28370 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SMARCA1P28370 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC19.98■□□□□ 0.79
SMARCA1P28370 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SMARCA1P28370 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMARCA1P28370 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
SMARCA1P28370 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC19.98■□□□□ 0.79
SMARCA1P28370 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMARCA1P28370 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
SMARCA1P28370 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMARCA1P28370 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
SMARCA1P28370 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMARCA1P28370 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMARCA1P28370 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMARCA1P28370 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMARCA1P28370 AP002414.1-201ENST00000391405 1147 ntBASIC19.98■□□□□ 0.79
SMARCA1P28370 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC19.98■□□□□ 0.79
SMARCA1P28370 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC19.98■□□□□ 0.79
SMARCA1P28370 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMARCA1P28370 TERC-201ENST00000602385 541 ntBASIC19.98■□□□□ 0.79
SMARCA1P28370 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC19.98■□□□□ 0.79
SMARCA1P28370 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
SMARCA1P28370 MIR1199-201ENST00000621445 119 ntBASIC19.98■□□□□ 0.79
SMARCA1P28370 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC19.98■□□□□ 0.79
SMARCA1P28370 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC19.98■□□□□ 0.79
SMARCA1P28370 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMARCA1P28370 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SMARCA1P28370 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC19.98■□□□□ 0.79
SMARCA1P28370 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC19.98■□□□□ 0.79
SMARCA1P28370 AP002414.3-201ENST00000589352 1468 ntBASIC19.98■□□□□ 0.79
SMARCA1P28370 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMARCA1P28370 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMARCA1P28370 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMARCA1P28370 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMARCA1P28370 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMARCA1P28370 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMARCA1P28370 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMARCA1P28370 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMARCA1P28370 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMARCA1P28370 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC19.97■□□□□ 0.79
SMARCA1P28370 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms