Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL5A1P20908 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL5A1P20908 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC16.63■□□□□ 0.25
COL5A1P20908 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL5A1P20908 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL5A1P20908 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
COL5A1P20908 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC16.63■□□□□ 0.25
COL5A1P20908 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL5A1P20908 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL5A1P20908 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL5A1P20908 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.63■□□□□ 0.25
COL5A1P20908 FAM185BP-201ENST00000443595 716 ntBASIC16.63■□□□□ 0.25
COL5A1P20908 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL5A1P20908 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC16.63■□□□□ 0.25
COL5A1P20908 FAM86C2P-203ENST00000528684 1004 ntBASIC16.63■□□□□ 0.25
COL5A1P20908 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC16.63■□□□□ 0.25
COL5A1P20908 BSG-214ENST00000614867 960 ntTSL 3 BASIC16.63■□□□□ 0.25
COL5A1P20908 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL5A1P20908 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.63■□□□□ 0.25
COL5A1P20908 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL5A1P20908 AKAP8P1-201ENST00000434743 1349 ntBASIC16.63■□□□□ 0.25
COL5A1P20908 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL5A1P20908 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC16.62■□□□□ 0.25
COL5A1P20908 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL5A1P20908 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL5A1P20908 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC16.62■□□□□ 0.25
COL5A1P20908 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC16.62■□□□□ 0.25
COL5A1P20908 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL5A1P20908 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
COL5A1P20908 NEFHP1-201ENST00000412845 2629 ntBASIC16.62■□□□□ 0.25
COL5A1P20908 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL5A1P20908 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL5A1P20908 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL5A1P20908 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL5A1P20908 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL5A1P20908 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL5A1P20908 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL5A1P20908 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC16.62■□□□□ 0.25
COL5A1P20908 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC16.62■□□□□ 0.25
COL5A1P20908 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
COL5A1P20908 AC069262.1-201ENST00000539058 672 ntBASIC16.62■□□□□ 0.25
COL5A1P20908 AC087641.1-201ENST00000557561 1021 ntBASIC16.62■□□□□ 0.25
COL5A1P20908 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC16.62■□□□□ 0.25
COL5A1P20908 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC16.62■□□□□ 0.25
COL5A1P20908 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC16.62■□□□□ 0.25
COL5A1P20908 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL5A1P20908 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
COL5A1P20908 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC16.62■□□□□ 0.25
COL5A1P20908 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.62■□□□□ 0.25
COL5A1P20908 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
COL5A1P20908 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL5A1P20908 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC16.62■□□□□ 0.25
COL5A1P20908 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC16.62■□□□□ 0.25
COL5A1P20908 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL5A1P20908 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
COL5A1P20908 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC16.62■□□□□ 0.25
COL5A1P20908 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL5A1P20908 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL5A1P20908 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL5A1P20908 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC16.61■□□□□ 0.25
COL5A1P20908 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL5A1P20908 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL5A1P20908 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC16.61■□□□□ 0.25
COL5A1P20908 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
COL5A1P20908 CNN2P2-201ENST00000443536 909 ntBASIC16.61■□□□□ 0.25
COL5A1P20908 CNN2P3-201ENST00000450201 906 ntBASIC16.61■□□□□ 0.25
COL5A1P20908 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC16.61■□□□□ 0.25
COL5A1P20908 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL5A1P20908 VPS29-207ENST00000549970 818 ntTSL 3 BASIC16.61■□□□□ 0.25
COL5A1P20908 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC16.61■□□□□ 0.25
COL5A1P20908 AL136317.3-201ENST00000618497 906 ntBASIC16.61■□□□□ 0.25
COL5A1P20908 AL645728.2-201ENST00000641974 660 ntBASIC16.61■□□□□ 0.25
COL5A1P20908 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC16.61■□□□□ 0.25
COL5A1P20908 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC16.61■□□□□ 0.25
COL5A1P20908 AL135999.2-201ENST00000622438 1686 ntBASIC16.61■□□□□ 0.25
COL5A1P20908 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC16.61■□□□□ 0.25
COL5A1P20908 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL5A1P20908 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL5A1P20908 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL5A1P20908 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
COL5A1P20908 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.61■□□□□ 0.25
COL5A1P20908 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL5A1P20908 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
COL5A1P20908 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC16.61■□□□□ 0.25
COL5A1P20908 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL5A1P20908 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL5A1P20908 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL5A1P20908 GPS2P2-201ENST00000430745 888 ntBASIC16.61■□□□□ 0.25
COL5A1P20908 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC16.61■□□□□ 0.25
COL5A1P20908 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL5A1P20908 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC16.61■□□□□ 0.25
COL5A1P20908 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL5A1P20908 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC16.61■□□□□ 0.25
COL5A1P20908 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL5A1P20908 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL5A1P20908 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC16.6■□□□□ 0.25
COL5A1P20908 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC16.6■□□□□ 0.25
COL5A1P20908 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
COL5A1P20908 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC16.6■□□□□ 0.25
COL5A1P20908 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms