Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
HMGA1P17096 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC18.06■□□□□ 0.48
HMGA1P17096 AQP6-205ENST00000618286 829 ntTSL 5 BASIC18.06■□□□□ 0.48
HMGA1P17096 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGA1P17096 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGA1P17096 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.06■□□□□ 0.48
HMGA1P17096 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HMGA1P17096 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HMGA1P17096 PC-214ENST00000628663 1470 ntTSL 5 BASIC18.06■□□□□ 0.48
HMGA1P17096 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
HMGA1P17096 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HMGA1P17096 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGA1P17096 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGA1P17096 NEFHP1-201ENST00000412845 2629 ntBASIC18.05■□□□□ 0.48
HMGA1P17096 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC18.05■□□□□ 0.48
HMGA1P17096 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.05■□□□□ 0.48
HMGA1P17096 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC18.05■□□□□ 0.48
HMGA1P17096 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.05■□□□□ 0.48
HMGA1P17096 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
HMGA1P17096 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HMGA1P17096 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
HMGA1P17096 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HMGA1P17096 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
HMGA1P17096 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HMGA1P17096 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC18.05■□□□□ 0.48
HMGA1P17096 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC18.05■□□□□ 0.48
HMGA1P17096 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC18.05■□□□□ 0.48
HMGA1P17096 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC18.05■□□□□ 0.48
HMGA1P17096 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC18.05■□□□□ 0.48
HMGA1P17096 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HMGA1P17096 AC004877.2-201ENST00000623941 599 ntBASIC18.05■□□□□ 0.48
HMGA1P17096 AC134684.3-201ENST00000641758 218 ntBASIC18.05■□□□□ 0.48
HMGA1P17096 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HMGA1P17096 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HMGA1P17096 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
HMGA1P17096 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HMGA1P17096 AC133963.1-201ENST00000504166 1679 ntBASIC18.05■□□□□ 0.48
HMGA1P17096 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
HMGA1P17096 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.05■□□□□ 0.48
HMGA1P17096 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HMGA1P17096 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HMGA1P17096 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGA1P17096 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGA1P17096 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC18.04■□□□□ 0.48
HMGA1P17096 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
HMGA1P17096 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HMGA1P17096 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC18.04■□□□□ 0.48
HMGA1P17096 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.04■□□□□ 0.48
HMGA1P17096 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
HMGA1P17096 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGA1P17096 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC18.04■□□□□ 0.48
HMGA1P17096 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HMGA1P17096 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC18.04■□□□□ 0.48
HMGA1P17096 AC004967.1-201ENST00000453589 447 ntBASIC18.04■□□□□ 0.48
HMGA1P17096 ALG1L5P-201ENST00000482043 771 ntBASIC18.04■□□□□ 0.48
HMGA1P17096 YBX1P5-201ENST00000509441 847 ntBASIC18.04■□□□□ 0.48
HMGA1P17096 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC18.04■□□□□ 0.48
HMGA1P17096 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC18.04■□□□□ 0.48
HMGA1P17096 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC18.04■□□□□ 0.48
HMGA1P17096 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC18.04■□□□□ 0.48
HMGA1P17096 CYB561-216ENST00000582297 897 ntTSL 3 BASIC18.04■□□□□ 0.48
HMGA1P17096 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HMGA1P17096 AP001160.2-201ENST00000596071 487 ntBASIC18.04■□□□□ 0.48
HMGA1P17096 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HMGA1P17096 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.04■□□□□ 0.48
HMGA1P17096 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGA1P17096 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGA1P17096 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGA1P17096 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGA1P17096 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGA1P17096 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGA1P17096 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC18.04■□□□□ 0.48
HMGA1P17096 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGA1P17096 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGA1P17096 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HMGA1P17096 AC008764.6-201ENST00000595909 2069 ntBASIC18.03■□□□□ 0.48
HMGA1P17096 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HMGA1P17096 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGA1P17096 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC18.03■□□□□ 0.48
HMGA1P17096 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HMGA1P17096 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
HMGA1P17096 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HMGA1P17096 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGA1P17096 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGA1P17096 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGA1P17096 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGA1P17096 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC18.03■□□□□ 0.48
HMGA1P17096 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGA1P17096 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HMGA1P17096 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC18.03■□□□□ 0.48
HMGA1P17096 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC18.03■□□□□ 0.48
HMGA1P17096 CD63-210ENST00000550776 870 ntTSL 5 BASIC18.03■□□□□ 0.48
HMGA1P17096 KRT19P2-202ENST00000557173 1012 ntBASIC18.03■□□□□ 0.48
HMGA1P17096 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC18.03■□□□□ 0.48
HMGA1P17096 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC18.03■□□□□ 0.48
HMGA1P17096 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGA1P17096 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC18.03■□□□□ 0.48
HMGA1P17096 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.03■□□□□ 0.48
HMGA1P17096 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGA1P17096 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 75.3 ms