Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VCANP13611 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VCANP13611 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
VCANP13611 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VCANP13611 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VCANP13611 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VCANP13611 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VCANP13611 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
VCANP13611 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
VCANP13611 TUBB1P2-201ENST00000422712 1306 ntBASIC17.91■□□□□ 0.46
VCANP13611 TUBB1P1-201ENST00000503144 1300 ntBASIC17.91■□□□□ 0.46
VCANP13611 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VCANP13611 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
VCANP13611 FALEC-201ENST00000416894 566 ntTSL 3 BASIC17.91■□□□□ 0.46
VCANP13611 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC17.91■□□□□ 0.46
VCANP13611 AC099548.2-209ENST00000480264 625 ntBASIC17.91■□□□□ 0.46
VCANP13611 AC027369.6-201ENST00000525520 931 ntBASIC17.91■□□□□ 0.46
VCANP13611 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VCANP13611 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VCANP13611 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VCANP13611 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VCANP13611 UXT-AS1-201ENST00000590504 1525 ntBASIC17.91■□□□□ 0.46
VCANP13611 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
VCANP13611 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC17.9■□□□□ 0.46
VCANP13611 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VCANP13611 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC17.9■□□□□ 0.46
VCANP13611 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC17.9■□□□□ 0.46
VCANP13611 WNT11-204ENST00000621122 789 ntTSL 5 BASIC17.9■□□□□ 0.46
VCANP13611 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC17.9■□□□□ 0.46
VCANP13611 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VCANP13611 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VCANP13611 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.9■□□□□ 0.46
VCANP13611 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VCANP13611 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC17.9■□□□□ 0.46
VCANP13611 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
VCANP13611 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VCANP13611 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VCANP13611 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
VCANP13611 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC17.9■□□□□ 0.46
VCANP13611 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VCANP13611 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VCANP13611 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VCANP13611 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
VCANP13611 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VCANP13611 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
VCANP13611 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
VCANP13611 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
VCANP13611 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
VCANP13611 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC17.9■□□□□ 0.46
VCANP13611 REEP4-207ENST00000523293 913 ntTSL 3 BASIC17.9■□□□□ 0.46
VCANP13611 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC17.9■□□□□ 0.46
VCANP13611 GGTLC5P-201ENST00000617623 998 ntBASIC17.9■□□□□ 0.46
VCANP13611 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC17.9■□□□□ 0.46
VCANP13611 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC17.9■□□□□ 0.46
VCANP13611 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC17.89■□□□□ 0.46
VCANP13611 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC17.89■□□□□ 0.46
VCANP13611 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC17.89■□□□□ 0.45
VCANP13611 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC17.89■□□□□ 0.45
VCANP13611 MIR6080-201ENST00000617359 66 ntBASIC17.89■□□□□ 0.45
VCANP13611 AL032819.2-201ENST00000624543 2162 ntBASIC17.89■□□□□ 0.45
VCANP13611 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC17.89■□□□□ 0.45
VCANP13611 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
VCANP13611 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VCANP13611 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VCANP13611 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
VCANP13611 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VCANP13611 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
VCANP13611 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VCANP13611 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
VCANP13611 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC17.89■□□□□ 0.45
VCANP13611 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VCANP13611 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
VCANP13611 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC17.89■□□□□ 0.45
VCANP13611 AC103810.3-201ENST00000583567 96 ntBASIC17.89■□□□□ 0.45
VCANP13611 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
VCANP13611 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VCANP13611 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.89■□□□□ 0.45
VCANP13611 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VCANP13611 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
VCANP13611 FZD10-202ENST00000539839 3282 ntBASIC17.88■□□□□ 0.45
VCANP13611 RN7SL837P-201ENST00000463010 287 ntBASIC17.88■□□□□ 0.45
VCANP13611 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC17.88■□□□□ 0.45
VCANP13611 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VCANP13611 RPS15-212ENST00000593052 629 ntTSL 2 BASIC17.88■□□□□ 0.45
VCANP13611 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.88■□□□□ 0.45
VCANP13611 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VCANP13611 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VCANP13611 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
VCANP13611 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
VCANP13611 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.88■□□□□ 0.45
VCANP13611 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VCANP13611 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
VCANP13611 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
VCANP13611 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VCANP13611 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
VCANP13611 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VCANP13611 AL590560.3-201ENST00000623350 461 ntBASIC17.88■□□□□ 0.45
VCANP13611 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
VCANP13611 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VCANP13611 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms