Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC10.77□□□□□ -0.68
APOBP04114 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC10.77□□□□□ -0.68
APOBP04114 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
APOBP04114 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.68
APOBP04114 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
APOBP04114 REXO1L11P-201ENST00000620964 1927 ntBASIC10.77□□□□□ -0.68
APOBP04114 AC004945.1-201ENST00000416738 983 ntBASIC10.77□□□□□ -0.68
APOBP04114 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC10.77□□□□□ -0.68
APOBP04114 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
APOBP04114 Six3os1_5.1-201ENST00000611000 271 ntBASIC10.77□□□□□ -0.68
APOBP04114 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC10.77□□□□□ -0.68
APOBP04114 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC10.77□□□□□ -0.68
APOBP04114 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC10.77□□□□□ -0.68
APOBP04114 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC10.77□□□□□ -0.68
APOBP04114 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC10.77□□□□□ -0.68
APOBP04114 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
APOBP04114 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
APOBP04114 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC10.77□□□□□ -0.69
APOBP04114 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
APOBP04114 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC10.77□□□□□ -0.69
APOBP04114 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
APOBP04114 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC10.77□□□□□ -0.69
APOBP04114 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC10.77□□□□□ -0.69
APOBP04114 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
APOBP04114 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC10.77□□□□□ -0.69
APOBP04114 AL135999.2-201ENST00000622438 1686 ntBASIC10.77□□□□□ -0.69
APOBP04114 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
APOBP04114 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC10.77□□□□□ -0.69
APOBP04114 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
APOBP04114 AC073592.3-201ENST00000625118 1834 ntBASIC10.77□□□□□ -0.69
APOBP04114 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
APOBP04114 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
APOBP04114 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC10.77□□□□□ -0.69
APOBP04114 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC10.77□□□□□ -0.69
APOBP04114 ARL16-202ENST00000570561 768 ntTSL 2 BASIC10.77□□□□□ -0.69
APOBP04114 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC10.77□□□□□ -0.69
APOBP04114 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
APOBP04114 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC10.77□□□□□ -0.69
APOBP04114 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC10.77□□□□□ -0.69
APOBP04114 ENSA-206ENST00000361631 725 ntTSL 2 BASIC10.77□□□□□ -0.69
APOBP04114 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
APOBP04114 AC112492.5-201ENST00000421897 457 ntBASIC10.77□□□□□ -0.69
APOBP04114 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC10.77□□□□□ -0.69
APOBP04114 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
APOBP04114 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC10.77□□□□□ -0.69
APOBP04114 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC10.77□□□□□ -0.69
APOBP04114 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
APOBP04114 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
APOBP04114 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC10.76□□□□□ -0.69
APOBP04114 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC10.76□□□□□ -0.69
APOBP04114 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC10.76□□□□□ -0.69
APOBP04114 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
APOBP04114 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
APOBP04114 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC10.76□□□□□ -0.69
APOBP04114 CROCCP3-202ENST00000420820 1947 ntBASIC10.76□□□□□ -0.69
APOBP04114 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
APOBP04114 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC10.76□□□□□ -0.69
APOBP04114 AC142381.1-201ENST00000426099 345 ntBASIC10.76□□□□□ -0.69
APOBP04114 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC10.76□□□□□ -0.69
APOBP04114 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC10.76□□□□□ -0.69
APOBP04114 KRT17P8-201ENST00000540749 863 ntBASIC10.76□□□□□ -0.69
APOBP04114 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC10.76□□□□□ -0.69
APOBP04114 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC10.76□□□□□ -0.69
APOBP04114 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
APOBP04114 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
APOBP04114 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC10.76□□□□□ -0.69
APOBP04114 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
APOBP04114 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC10.76□□□□□ -0.69
APOBP04114 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC10.76□□□□□ -0.69
APOBP04114 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
APOBP04114 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
APOBP04114 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC10.76□□□□□ -0.69
APOBP04114 AC004840.1-201ENST00000636359 365 ntBASIC10.76□□□□□ -0.69
APOBP04114 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC10.76□□□□□ -0.69
APOBP04114 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC10.76□□□□□ -0.69
APOBP04114 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC10.76□□□□□ -0.69
APOBP04114 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
APOBP04114 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC10.76□□□□□ -0.69
APOBP04114 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
APOBP04114 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
APOBP04114 EFTUD1P1-204ENST00000560401 1798 ntBASIC10.76□□□□□ -0.69
APOBP04114 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC10.76□□□□□ -0.69
APOBP04114 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC10.76□□□□□ -0.69
APOBP04114 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC10.76□□□□□ -0.69
APOBP04114 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC10.76□□□□□ -0.69
APOBP04114 SPDYE18-201ENST00000510091 1050 ntBASIC10.76□□□□□ -0.69
APOBP04114 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC10.76□□□□□ -0.69
APOBP04114 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC10.76□□□□□ -0.69
APOBP04114 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC10.76□□□□□ -0.69
APOBP04114 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
APOBP04114 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
APOBP04114 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
APOBP04114 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC10.76□□□□□ -0.69
APOBP04114 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC10.76□□□□□ -0.69
APOBP04114 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
APOBP04114 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC10.76□□□□□ -0.69
APOBP04114 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
APOBP04114 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
APOBP04114 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
APOBP04114 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC10.75□□□□□ -0.69
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms