Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDKL5O76039 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDKL5O76039 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CDKL5O76039 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDKL5O76039 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
CDKL5O76039 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC20.35■□□□□ 0.85
CDKL5O76039 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDKL5O76039 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC20.35■□□□□ 0.85
CDKL5O76039 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC20.35■□□□□ 0.85
CDKL5O76039 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC20.35■□□□□ 0.85
CDKL5O76039 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC20.35■□□□□ 0.85
CDKL5O76039 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC20.35■□□□□ 0.85
CDKL5O76039 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
CDKL5O76039 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDKL5O76039 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC20.35■□□□□ 0.85
CDKL5O76039 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDKL5O76039 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
CDKL5O76039 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDKL5O76039 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC20.35■□□□□ 0.85
CDKL5O76039 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC20.35■□□□□ 0.85
CDKL5O76039 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC20.35■□□□□ 0.85
CDKL5O76039 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDKL5O76039 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDKL5O76039 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDKL5O76039 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDKL5O76039 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDKL5O76039 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDKL5O76039 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDKL5O76039 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC20.34■□□□□ 0.85
CDKL5O76039 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CDKL5O76039 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
CDKL5O76039 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDKL5O76039 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
CDKL5O76039 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDKL5O76039 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CDKL5O76039 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CDKL5O76039 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDKL5O76039 AC003669.1-201ENST00000334569 611 ntBASIC20.34■□□□□ 0.85
CDKL5O76039 ENSA-206ENST00000361631 725 ntTSL 2 BASIC20.34■□□□□ 0.85
CDKL5O76039 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC20.34■□□□□ 0.85
CDKL5O76039 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC20.34■□□□□ 0.85
CDKL5O76039 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CDKL5O76039 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDKL5O76039 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC20.34■□□□□ 0.85
CDKL5O76039 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CDKL5O76039 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
CDKL5O76039 COX5A-204ENST00000567270 579 ntTSL 3 BASIC20.34■□□□□ 0.85
CDKL5O76039 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC20.34■□□□□ 0.85
CDKL5O76039 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC20.34■□□□□ 0.85
CDKL5O76039 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CDKL5O76039 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC20.34■□□□□ 0.85
CDKL5O76039 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC20.34■□□□□ 0.85
CDKL5O76039 AD001527.2-201ENST00000622994 785 ntBASIC20.34■□□□□ 0.85
CDKL5O76039 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDKL5O76039 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDKL5O76039 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDKL5O76039 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CDKL5O76039 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDKL5O76039 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC20.34■□□□□ 0.85
CDKL5O76039 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC20.34■□□□□ 0.85
CDKL5O76039 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDKL5O76039 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDKL5O76039 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDKL5O76039 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
CDKL5O76039 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CDKL5O76039 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CDKL5O76039 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CDKL5O76039 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CDKL5O76039 RCN1P2-201ENST00000398357 915 ntBASIC20.33■□□□□ 0.85
CDKL5O76039 UPK3BP1-201ENST00000428678 509 ntBASIC20.33■□□□□ 0.85
CDKL5O76039 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
CDKL5O76039 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CDKL5O76039 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CDKL5O76039 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.84
CDKL5O76039 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CDKL5O76039 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CDKL5O76039 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC20.33■□□□□ 0.84
CDKL5O76039 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CDKL5O76039 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CDKL5O76039 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC20.33■□□□□ 0.84
CDKL5O76039 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC20.33■□□□□ 0.84
CDKL5O76039 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDKL5O76039 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDKL5O76039 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC20.32■□□□□ 0.84
CDKL5O76039 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDKL5O76039 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDKL5O76039 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDKL5O76039 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CDKL5O76039 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC20.32■□□□□ 0.84
CDKL5O76039 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDKL5O76039 BET1L-206ENST00000486280 665 ntTSL 3 BASIC20.32■□□□□ 0.84
CDKL5O76039 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC20.32■□□□□ 0.84
CDKL5O76039 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
CDKL5O76039 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDKL5O76039 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC20.32■□□□□ 0.84
CDKL5O76039 AC099336.1-202ENST00000602961 463 ntBASIC20.32■□□□□ 0.84
CDKL5O76039 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDKL5O76039 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDKL5O76039 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CDKL5O76039 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms