Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
SGCEO43556 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
SGCEO43556 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
SGCEO43556 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC15.52■□□□□ 0.08
SGCEO43556 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC15.52■□□□□ 0.08
SGCEO43556 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC15.52■□□□□ 0.08
SGCEO43556 CNP-204ENST00000472031 1019 ntTSL 2 BASIC15.52■□□□□ 0.08
SGCEO43556 RN7SL606P-201ENST00000472779 293 ntBASIC15.52■□□□□ 0.08
SGCEO43556 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
SGCEO43556 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC15.52■□□□□ 0.08
SGCEO43556 AC011840.4-201ENST00000578471 627 ntBASIC15.52■□□□□ 0.08
SGCEO43556 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.08
SGCEO43556 LINC01451-201ENST00000623792 534 ntBASIC15.52■□□□□ 0.08
SGCEO43556 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC15.52■□□□□ 0.08
SGCEO43556 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC15.52■□□□□ 0.08
SGCEO43556 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
SGCEO43556 HLA-J-201ENST00000462773 1622 ntBASIC15.52■□□□□ 0.08
SGCEO43556 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
SGCEO43556 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
SGCEO43556 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
SGCEO43556 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC15.52■□□□□ 0.07
SGCEO43556 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
SGCEO43556 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
SGCEO43556 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
SGCEO43556 FST-202ENST00000396947 2538 ntTSL 5 BASIC15.52■□□□□ 0.07
SGCEO43556 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC15.52■□□□□ 0.07
SGCEO43556 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC15.52■□□□□ 0.07
SGCEO43556 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC15.52■□□□□ 0.07
SGCEO43556 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
SGCEO43556 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
SGCEO43556 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
SGCEO43556 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
SGCEO43556 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
SGCEO43556 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SGCEO43556 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
SGCEO43556 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC15.51■□□□□ 0.07
SGCEO43556 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SGCEO43556 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SGCEO43556 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SGCEO43556 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC15.51■□□□□ 0.07
SGCEO43556 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SGCEO43556 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
SGCEO43556 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC15.51■□□□□ 0.07
SGCEO43556 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
SGCEO43556 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC15.51■□□□□ 0.07
SGCEO43556 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
SGCEO43556 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SGCEO43556 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SGCEO43556 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SGCEO43556 PCED1CP-201ENST00000419887 785 ntBASIC15.51■□□□□ 0.07
SGCEO43556 AC096633.1-201ENST00000422446 749 ntBASIC15.51■□□□□ 0.07
SGCEO43556 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC15.51■□□□□ 0.07
SGCEO43556 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC15.51■□□□□ 0.07
SGCEO43556 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC15.51■□□□□ 0.07
SGCEO43556 AC116407.4-201ENST00000623319 1061 ntBASIC15.51■□□□□ 0.07
SGCEO43556 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC15.51■□□□□ 0.07
SGCEO43556 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
SGCEO43556 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
SGCEO43556 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SGCEO43556 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SGCEO43556 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SGCEO43556 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SGCEO43556 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SGCEO43556 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC15.51■□□□□ 0.07
SGCEO43556 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SGCEO43556 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
SGCEO43556 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SGCEO43556 AC018695.7-201ENST00000624587 2492 ntBASIC15.51■□□□□ 0.07
SGCEO43556 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SGCEO43556 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SGCEO43556 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SGCEO43556 REXO1L11P-201ENST00000620964 1927 ntBASIC15.51■□□□□ 0.07
SGCEO43556 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SGCEO43556 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SGCEO43556 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SGCEO43556 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC15.51■□□□□ 0.07
SGCEO43556 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
SGCEO43556 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
SGCEO43556 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC15.51■□□□□ 0.07
SGCEO43556 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
SGCEO43556 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SGCEO43556 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SGCEO43556 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SGCEO43556 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SGCEO43556 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC15.5■□□□□ 0.07
SGCEO43556 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
SGCEO43556 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SGCEO43556 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SGCEO43556 ANKRD26P3-201ENST00000454044 2748 ntBASIC15.5■□□□□ 0.07
SGCEO43556 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SGCEO43556 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
SGCEO43556 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC15.5■□□□□ 0.07
SGCEO43556 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SGCEO43556 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SGCEO43556 CHCHD2P8-201ENST00000429873 447 ntBASIC15.5■□□□□ 0.07
SGCEO43556 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC15.5■□□□□ 0.07
SGCEO43556 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
SGCEO43556 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
SGCEO43556 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SGCEO43556 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms