Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
PCDHA3Q9Y5H8 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
PCDHA3Q9Y5H8 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
PCDHA3Q9Y5H8 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
PCDHA3Q9Y5H8 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
PCDHA3Q9Y5H8 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC25.5■■□□□ 1.67
PCDHA3Q9Y5H8 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
PCDHA3Q9Y5H8 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
PCDHA3Q9Y5H8 CEBPA-AS1-201ENST00000592982 2198 ntBASIC25.5■■□□□ 1.67
PCDHA3Q9Y5H8 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC25.5■■□□□ 1.67
PCDHA3Q9Y5H8 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
PCDHA3Q9Y5H8 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC25.49■■□□□ 1.67
PCDHA3Q9Y5H8 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
PCDHA3Q9Y5H8 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
PCDHA3Q9Y5H8 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
PCDHA3Q9Y5H8 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
PCDHA3Q9Y5H8 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
PCDHA3Q9Y5H8 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC25.48■■□□□ 1.67
PCDHA3Q9Y5H8 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC25.48■■□□□ 1.67
PCDHA3Q9Y5H8 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC25.48■■□□□ 1.67
PCDHA3Q9Y5H8 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
PCDHA3Q9Y5H8 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC25.47■■□□□ 1.67
PCDHA3Q9Y5H8 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
PCDHA3Q9Y5H8 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
PCDHA3Q9Y5H8 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC25.47■■□□□ 1.67
PCDHA3Q9Y5H8 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC25.47■■□□□ 1.67
PCDHA3Q9Y5H8 AL359258.2-201ENST00000564063 1566 ntBASIC25.46■■□□□ 1.67
PCDHA3Q9Y5H8 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC25.46■■□□□ 1.67
PCDHA3Q9Y5H8 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC25.45■■□□□ 1.66
PCDHA3Q9Y5H8 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
PCDHA3Q9Y5H8 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC25.45■■□□□ 1.66
PCDHA3Q9Y5H8 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
PCDHA3Q9Y5H8 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
PCDHA3Q9Y5H8 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
PCDHA3Q9Y5H8 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC25.43■■□□□ 1.66
PCDHA3Q9Y5H8 AGPS-202ENST00000409888 815 ntTSL 4 BASIC25.43■■□□□ 1.66
PCDHA3Q9Y5H8 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
PCDHA3Q9Y5H8 AL359504.2-201ENST00000605506 1601 ntBASIC25.43■■□□□ 1.66
PCDHA3Q9Y5H8 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC25.43■■□□□ 1.66
PCDHA3Q9Y5H8 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
PCDHA3Q9Y5H8 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
PCDHA3Q9Y5H8 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC25.42■■□□□ 1.66
PCDHA3Q9Y5H8 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC25.42■■□□□ 1.66
PCDHA3Q9Y5H8 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC25.42■■□□□ 1.66
PCDHA3Q9Y5H8 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC25.42■■□□□ 1.66
PCDHA3Q9Y5H8 RNF166-209ENST00000567844 633 ntTSL 5 BASIC25.42■■□□□ 1.66
PCDHA3Q9Y5H8 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC25.42■■□□□ 1.66
PCDHA3Q9Y5H8 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
PCDHA3Q9Y5H8 SNAI3-AS1-204ENST00000567997 2048 ntBASIC25.41■■□□□ 1.66
PCDHA3Q9Y5H8 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC25.41■■□□□ 1.66
PCDHA3Q9Y5H8 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC25.41■■□□□ 1.66
PCDHA3Q9Y5H8 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC25.41■■□□□ 1.66
PCDHA3Q9Y5H8 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC25.4■■□□□ 1.66
PCDHA3Q9Y5H8 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
PCDHA3Q9Y5H8 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC25.4■■□□□ 1.66
PCDHA3Q9Y5H8 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
PCDHA3Q9Y5H8 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC25.4■■□□□ 1.66
PCDHA3Q9Y5H8 MED25-210ENST00000612854 801 ntTSL 5 BASIC25.4■■□□□ 1.66
PCDHA3Q9Y5H8 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
PCDHA3Q9Y5H8 MED25-214ENST00000622402 642 ntTSL 5 BASIC25.4■■□□□ 1.66
PCDHA3Q9Y5H8 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC25.4■■□□□ 1.66
PCDHA3Q9Y5H8 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC25.39■■□□□ 1.66
PCDHA3Q9Y5H8 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
PCDHA3Q9Y5H8 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC25.39■■□□□ 1.66
PCDHA3Q9Y5H8 CR559946.2-201ENST00000623684 991 ntBASIC25.39■■□□□ 1.66
PCDHA3Q9Y5H8 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
PCDHA3Q9Y5H8 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
PCDHA3Q9Y5H8 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
PCDHA3Q9Y5H8 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
PCDHA3Q9Y5H8 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC25.38■■□□□ 1.65
PCDHA3Q9Y5H8 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
PCDHA3Q9Y5H8 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC25.38■■□□□ 1.65
PCDHA3Q9Y5H8 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC25.37■■□□□ 1.65
PCDHA3Q9Y5H8 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC25.37■■□□□ 1.65
PCDHA3Q9Y5H8 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC25.37■■□□□ 1.65
PCDHA3Q9Y5H8 AC096887.2-201ENST00000623443 1957 ntBASIC25.37■■□□□ 1.65
PCDHA3Q9Y5H8 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC25.36■■□□□ 1.65
PCDHA3Q9Y5H8 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
PCDHA3Q9Y5H8 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
PCDHA3Q9Y5H8 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
PCDHA3Q9Y5H8 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC25.36■■□□□ 1.65
PCDHA3Q9Y5H8 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC25.36■■□□□ 1.65
PCDHA3Q9Y5H8 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC25.36■■□□□ 1.65
PCDHA3Q9Y5H8 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC25.35■■□□□ 1.65
PCDHA3Q9Y5H8 AC093323.1-202ENST00000635031 2045 ntBASIC25.35■■□□□ 1.65
PCDHA3Q9Y5H8 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
PCDHA3Q9Y5H8 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC25.34■■□□□ 1.65
PCDHA3Q9Y5H8 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC25.34■■□□□ 1.65
PCDHA3Q9Y5H8 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC25.34■■□□□ 1.65
PCDHA3Q9Y5H8 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC25.34■■□□□ 1.65
PCDHA3Q9Y5H8 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
PCDHA3Q9Y5H8 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC25.34■■□□□ 1.65
PCDHA3Q9Y5H8 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC25.33■■□□□ 1.65
PCDHA3Q9Y5H8 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
PCDHA3Q9Y5H8 ABHD17AP4-201ENST00000411545 909 ntBASIC25.33■■□□□ 1.65
PCDHA3Q9Y5H8 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
PCDHA3Q9Y5H8 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.64
PCDHA3Q9Y5H8 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
PCDHA3Q9Y5H8 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC25.32■■□□□ 1.64
PCDHA3Q9Y5H8 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms