Protein–RNA interactions for Protein: P48412

UPF3, Nonsense-mediated mRNA decay protein 3, yeastyeast

Known RBP Predictions only

Length 387 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UPF3P48412 AIM17YHL021C 1398 nt6.52□□□□□ -1.37
UPF3P48412 ARP3YJR065C 1350 nt6.52□□□□□ -1.37
UPF3P48412 YJL163CYJL163C 1668 nt6.52□□□□□ -1.37
UPF3P48412 MIP1YOR330C 3765 nt6.51□□□□□ -1.37
UPF3P48412 AAD14YNL331C 1131 nt6.51□□□□□ -1.37
UPF3P48412 YOL046CYOL046C 675 nt6.51□□□□□ -1.37
UPF3P48412 IRC11YOR013W 471 nt6.51□□□□□ -1.37
UPF3P48412 PEX31YGR004W 1389 nt6.51□□□□□ -1.37
UPF3P48412 FCY22YER060W-A 1593 nt6.5□□□□□ -1.37
UPF3P48412 YHR140WYHR140W 720 nt6.5□□□□□ -1.37
UPF3P48412 PRI1YIR008C 1230 nt6.5□□□□□ -1.37
UPF3P48412 SUR7YML052W 909 nt6.5□□□□□ -1.37
UPF3P48412 LGE1YPL055C 999 nt6.5□□□□□ -1.37
UPF3P48412 RSP5YER125W 2430 nt6.5□□□□□ -1.37
UPF3P48412 ARO10YDR380W 1908 nt6.5□□□□□ -1.37
UPF3P48412 HXT15YDL245C 1704 nt6.5□□□□□ -1.37
UPF3P48412 HXT16YJR158W 1704 nt6.5□□□□□ -1.37
UPF3P48412 PET112YBL080C 1626 nt6.5□□□□□ -1.37
UPF3P48412 MSS1YMR023C 1581 nt6.49□□□□□ -1.37
UPF3P48412 MPH3YJR160C 1809 nt6.49□□□□□ -1.37
UPF3P48412 YGL102CYGL102C 429 nt6.49□□□□□ -1.37
UPF3P48412 PUS4YNL292W 1212 nt6.49□□□□□ -1.37
UPF3P48412 CNM67YNL225C 1746 nt6.48□□□□□ -1.37
UPF3P48412 SMX3YPR182W 261 nt6.48□□□□□ -1.37
UPF3P48412 RPO26YPR187W 468 nt6.48□□□□□ -1.37
UPF3P48412 BDF2YDL070W 1917 nt6.48□□□□□ -1.37
UPF3P48412 VMA2YBR127C 1554 nt6.48□□□□□ -1.37
UPF3P48412 COX15YER141W 1461 nt6.47□□□□□ -1.37
UPF3P48412 YHR020WYHR020W 2067 nt6.47□□□□□ -1.37
UPF3P48412 FRE5YOR384W 2085 nt6.47□□□□□ -1.37
UPF3P48412 HSP12YFL014W 330 nt6.47□□□□□ -1.37
UPF3P48412 YKR032WYKR032W 315 nt6.47□□□□□ -1.37
UPF3P48412 TMA46YOR091W 1038 nt6.47□□□□□ -1.37
UPF3P48412 CLN1YMR199W 1641 nt6.47□□□□□ -1.37
UPF3P48412 SIT1YEL065W 1887 nt6.46□□□□□ -1.38
UPF3P48412 NCS6YGL211W 1080 nt6.46□□□□□ -1.38
UPF3P48412 ERP5YHR110W 639 nt6.46□□□□□ -1.38
UPF3P48412 YLR122CYLR122C 378 nt6.46□□□□□ -1.38
UPF3P48412 CUE4YML101C 354 nt6.46□□□□□ -1.38
UPF3P48412 ECM38YLR299W 1983 nt6.46□□□□□ -1.38
UPF3P48412 ICP55YER078C 1536 nt6.45□□□□□ -1.38
UPF3P48412 BIO3YNR058W 1443 nt6.45□□□□□ -1.38
UPF3P48412 DYS1YHR068W 1164 nt6.45□□□□□ -1.38
UPF3P48412 YLL056CYLL056C 897 nt6.45□□□□□ -1.38
UPF3P48412 SPE3YPR069C 882 nt6.45□□□□□ -1.38
UPF3P48412 BNA5YLR231C 1362 nt6.44□□□□□ -1.38
UPF3P48412 NUP49YGL172W 1419 nt6.44□□□□□ -1.38
UPF3P48412 YBR284WYBR284W 2394 nt6.44□□□□□ -1.38
UPF3P48412 tG(GCC)BtG(GCC)B 71 nt6.44□□□□□ -1.38
UPF3P48412 SUF16tG(GCC)C 71 nt6.44□□□□□ -1.38
UPF3P48412 tG(GCC)D1tG(GCC)D1 71 nt6.44□□□□□ -1.38
UPF3P48412 tG(GCC)D2tG(GCC)D2 71 nt6.44□□□□□ -1.38
UPF3P48412 tG(GCC)EtG(GCC)E 71 nt6.44□□□□□ -1.38
UPF3P48412 SUF20tG(GCC)F1 71 nt6.44□□□□□ -1.38
UPF3P48412 tG(GCC)F2tG(GCC)F2 71 nt6.44□□□□□ -1.38
UPF3P48412 tG(GCC)G1tG(GCC)G1 71 nt6.44□□□□□ -1.38
UPF3P48412 tG(GCC)G2tG(GCC)G2 71 nt6.44□□□□□ -1.38
UPF3P48412 tG(GCC)J1tG(GCC)J1 71 nt6.44□□□□□ -1.38
UPF3P48412 SUF23tG(GCC)J2 71 nt6.44□□□□□ -1.38
UPF3P48412 tG(GCC)MtG(GCC)M 71 nt6.44□□□□□ -1.38
UPF3P48412 tG(GCC)O1tG(GCC)O1 71 nt6.44□□□□□ -1.38
UPF3P48412 SUF17tG(GCC)O2 71 nt6.44□□□□□ -1.38
UPF3P48412 tG(GCC)P1tG(GCC)P1 71 nt6.44□□□□□ -1.38
UPF3P48412 tG(GCC)P2tG(GCC)P2 71 nt6.44□□□□□ -1.38
UPF3P48412 CTF8YHR191C 402 nt6.44□□□□□ -1.38
UPF3P48412 ERP2YAL007C 648 nt6.44□□□□□ -1.38
UPF3P48412 YJU2YKL095W 837 nt6.44□□□□□ -1.38
UPF3P48412 SWD1YAR003W 1281 nt6.44□□□□□ -1.38
UPF3P48412 TOS6YNL300W 309 nt6.44□□□□□ -1.38
UPF3P48412 PPM2YOL141W 2088 nt6.43□□□□□ -1.38
UPF3P48412 MSC3YLR219W 2187 nt6.43□□□□□ -1.38
UPF3P48412 CDC10YCR002C 969 nt6.43□□□□□ -1.38
UPF3P48412 YDR415CYDR415C 1125 nt6.43□□□□□ -1.38
UPF3P48412 MED6YHR058C 888 nt6.43□□□□□ -1.38
UPF3P48412 YJR107WYJR107W 987 nt6.43□□□□□ -1.38
UPF3P48412 YHM2YMR241W 945 nt6.43□□□□□ -1.38
UPF3P48412 MRPL19YNL185C 477 nt6.43□□□□□ -1.38
UPF3P48412 YPR076WYPR076W 375 nt6.43□□□□□ -1.38
UPF3P48412 YBR113WYBR113W 483 nt6.43□□□□□ -1.38
UPF3P48412 SUF5tG(CCC)O 72 nt6.42□□□□□ -1.38
UPF3P48412 MIA40YKL195W 1212 nt6.42□□□□□ -1.38
UPF3P48412 LDB7YBL006C 543 nt6.42□□□□□ -1.38
UPF3P48412 SEC62YPL094C 825 nt6.42□□□□□ -1.38
UPF3P48412 ASR1YPR093C 867 nt6.42□□□□□ -1.38
UPF3P48412 ADH5YBR145W 1056 nt6.42□□□□□ -1.38
UPF3P48412 STT3YGL022W 2157 nt6.42□□□□□ -1.38
UPF3P48412 ATG18YFR021W 1503 nt6.41□□□□□ -1.38
UPF3P48412 YKL018C-AYKL018C-A 300 nt6.41□□□□□ -1.38
UPF3P48412 TKL2YBR117C 2046 nt6.41□□□□□ -1.38
UPF3P48412 CHL4YDR254W 1377 nt6.41□□□□□ -1.38
UPF3P48412 COQ1YBR003W 1422 nt6.41□□□□□ -1.38
UPF3P48412 HXT17YNR072W 1695 nt6.4□□□□□ -1.38
UPF3P48412 PPH21YDL134C 1110 nt6.4□□□□□ -1.38
UPF3P48412 TRP1YDR007W 675 nt6.4□□□□□ -1.38
UPF3P48412 HED1YDR014W-A 489 nt6.4□□□□□ -1.38
UPF3P48412 AGX1YFL030W 1158 nt6.4□□□□□ -1.38
UPF3P48412 ECM7YLR443W 1347 nt6.4□□□□□ -1.39
UPF3P48412 PLB3YOL011W 2061 nt6.4□□□□□ -1.39
UPF3P48412 HEM1YDR232W 1647 nt6.39□□□□□ -1.39
UPF3P48412 NOP7YGR103W 1818 nt6.39□□□□□ -1.39
Retrieved 100 of 7,029 protein–RNA pairs in 18.1 ms