Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 MAP4K4-203ENST00000347699 3792 ntTSL 1 (best) BASIC6.85□□□□□ -1.319e-8■■■■□ 21.1
CDC40O60508 MAP4K4-207ENST00000417294 4251 ntTSL 55.64□□□□□ -1.519e-8■■■■□ 21.1
CDC40O60508 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.163e-6■■■■□ 21.1
CDC40O60508 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC13.65□□□□□ -0.223e-6■■■■□ 21.1
CDC40O60508 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.696e-7■■■■□ 21
CDC40O60508 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.113e-6■■■■□ 21
CDC40O60508 ANKMY1-217ENST00000459901 3936 ntTSL 49.32□□□□□ -0.922e-6■■■■□ 20.9
CDC40O60508 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC29.59■■■□□ 2.339e-7■■■■□ 20.9
CDC40O60508 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC29.34■■■□□ 2.299e-7■■■■□ 20.9
CDC40O60508 PRR5-205ENST00000431834 1612 ntTSL 527.3■■□□□ 1.969e-7■■■■□ 20.9
CDC40O60508 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC22.79■■□□□ 1.249e-7■■■■□ 20.9
CDC40O60508 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.129e-7■■■■□ 20.9
CDC40O60508 PRR5-209ENST00000457960 881 ntTSL 521.69■■□□□ 1.069e-7■■■■□ 20.9
CDC40O60508 PRR5-212ENST00000477331 1041 ntTSL 218.42■□□□□ 0.549e-7■■■■□ 20.9
CDC40O60508 PRR5-208ENST00000455389 1431 ntTSL 317.23■□□□□ 0.359e-7■■■■□ 20.9
CDC40O60508 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.349e-7■■■■□ 20.9
CDC40O60508 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC16.89■□□□□ 0.39e-7■■■■□ 20.9
CDC40O60508 PRR5-206ENST00000432186 905 ntTSL 216.64■□□□□ 0.259e-7■■■■□ 20.9
CDC40O60508 PRR5-207ENST00000432916 1430 ntTSL 215.22■□□□□ 0.039e-7■■■■□ 20.9
CDC40O60508 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC14.88□□□□□ -0.039e-7■■■■□ 20.9
CDC40O60508 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC14.67□□□□□ -0.069e-7■■■■□ 20.9
CDC40O60508 PRR5-215ENST00000495017 2125 ntTSL 1 (best)13.9□□□□□ -0.189e-7■■■■□ 20.9
CDC40O60508 PRR5-ARHGAP8-204ENST00000515632 1590 ntTSL 213.12□□□□□ -0.319e-7■■■■□ 20.9
CDC40O60508 PRR5-214ENST00000492475 920 ntTSL 513.12□□□□□ -0.319e-7■■■■□ 20.9
CDC40O60508 PRR5-ARHGAP8-203ENST00000495250 1271 ntTSL 212.92□□□□□ -0.349e-7■■■■□ 20.9
CDC40O60508 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC16.56■□□□□ 0.242e-6■■■■□ 20.9
CDC40O60508 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC15.75■□□□□ 0.112e-6■■■■□ 20.9
CDC40O60508 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC15.68■□□□□ 0.12e-6■■■■□ 20.9
CDC40O60508 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.029e-8■■■■□ 20.8
CDC40O60508 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.259e-8■■■■□ 20.8
CDC40O60508 BMP4-208ENST00000559642 505 ntTSL 311.9□□□□□ -0.59e-8■■■■□ 20.8
CDC40O60508 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.14e-6■■■■□ 20.6
CDC40O60508 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.024e-6■■■■□ 20.6
CDC40O60508 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.054e-6■■■■□ 20.6
CDC40O60508 HPCAL1-203ENST00000419810 4781 ntTSL 1 (best)12.72□□□□□ -0.374e-6■■■■□ 20.6
CDC40O60508 RXRA-203ENST00000484822 5215 ntTSL 214.86□□□□□ -0.032e-6■■■■□ 20.5
CDC40O60508 SEPT9-238ENST00000591472 555 ntTSL 410.89□□□□□ -0.678e-7■■■■□ 20.5
CDC40O60508 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.563e-6■■■■□ 20.5
CDC40O60508 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC18.48■□□□□ 0.553e-6■■■■□ 20.5
CDC40O60508 FBXO31-204ENST00000565593 2717 ntTSL 517.92■□□□□ 0.463e-6■■■■□ 20.5
CDC40O60508 WDR73-215ENST00000560182 542 ntTSL 420.23■□□□□ 0.835e-6■■■■□ 20.4
CDC40O60508 WDR73-208ENST00000559126 2031 ntTSL 217.56■□□□□ 0.45e-6■■■■□ 20.4
CDC40O60508 WDR73-205ENST00000558521 997 ntTSL 315.46■□□□□ 0.075e-6■■■■□ 20.4
CDC40O60508 WDR73-210ENST00000559224 788 ntTSL 515.46■□□□□ 0.075e-6■■■■□ 20.4
CDC40O60508 WDR73-211ENST00000559452 1240 ntTSL 314.63□□□□□ -0.075e-6■■■■□ 20.4
CDC40O60508 WDR73-213ENST00000559994 2063 ntTSL 514.02□□□□□ -0.165e-6■■■■□ 20.4
CDC40O60508 WDR73-207ENST00000559015 2140 ntTSL 213.88□□□□□ -0.195e-6■■■■□ 20.4
CDC40O60508 WDR73-206ENST00000558608 2154 ntTSL 213.3□□□□□ -0.285e-6■■■■□ 20.4
CDC40O60508 WDR73-202ENST00000434634 5387 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.335e-6■■■■□ 20.4
CDC40O60508 WDR73-201ENST00000398528 1915 ntTSL 1 (best)12.6□□□□□ -0.395e-6■■■■□ 20.4
CDC40O60508 WDR73-218ENST00000560966 5071 ntTSL 212.39□□□□□ -0.435e-6■■■■□ 20.4
CDC40O60508 WDR73-219ENST00000561329 1007 ntTSL 29.9□□□□□ -0.825e-6■■■■□ 20.4
CDC40O60508 WDR73-209ENST00000559178 933 ntTSL 39□□□□□ -0.975e-6■■■■□ 20.4
CDC40O60508 WDR73-217ENST00000560835 582 ntTSL 28.81□□□□□ -15e-6■■■■□ 20.4
CDC40O60508 WDR73-203ENST00000558019 528 ntTSL 48.81□□□□□ -15e-6■■■■□ 20.4
CDC40O60508 WDR73-214ENST00000560088 526 ntTSL 38.1□□□□□ -1.115e-6■■■■□ 20.4
CDC40O60508 WDR73-221ENST00000561447 560 ntTSL 47.87□□□□□ -1.155e-6■■■■□ 20.4
CDC40O60508 WDR73-216ENST00000560252 1180 ntTSL 27.68□□□□□ -1.185e-6■■■■□ 20.4
CDC40O60508 WDR73-212ENST00000559877 551 ntTSL 37.04□□□□□ -1.285e-6■■■■□ 20.4
CDC40O60508 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC17.94■□□□□ 0.461e-6■■■■□ 20.4
CDC40O60508 CTBP1-213ENST00000514210 856 ntTSL 213.7□□□□□ -0.221e-6■■■■□ 20.4
CDC40O60508 LINC00511-202ENST00000457958 1696 ntTSL 1 (best) BASIC11.51□□□□□ -0.571e-6■■■■□ 20.4
CDC40O60508 LINC00511-214ENST00000581801 379 ntTSL 39.96□□□□□ -0.821e-6■■■■□ 20.4
CDC40O60508 LINC00511-210ENST00000580861 467 ntTSL 48.02□□□□□ -1.131e-6■■■■□ 20.4
CDC40O60508 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.535e-6■■■■□ 20.4
CDC40O60508 SHC2-206ENST00000590222 951 ntTSL 515.69■□□□□ 0.15e-6■■■■□ 20.4
CDC40O60508 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC13.61□□□□□ -0.237e-7■■■■□ 20.4
CDC40O60508 ABCC6-202ENST00000456970 4137 ntTSL 213.04□□□□□ -0.327e-7■■■■□ 20.4
CDC40O60508 ABCC6-201ENST00000205557 5747 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.337e-7■■■■□ 20.4
CDC40O60508 CTBP1-207ENST00000505826 657 ntTSL 515.64■□□□□ 0.091e-6■■■■□ 20.4
CDC40O60508 CTBP1-216ENST00000514669 809 ntTSL 315.64■□□□□ 0.091e-6■■■■□ 20.4
CDC40O60508 RXRA-201ENST00000356384 5770 ntTSL 516■□□□□ 0.155e-6■■■■□ 20.4
CDC40O60508 CCNL2-216ENST00000488340 1598 ntTSL 220.01■□□□□ 0.792e-6■■■■□ 20.3
CDC40O60508 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.362e-6■■■■□ 20.3
CDC40O60508 CCNL2-213ENST00000481223 2815 ntTSL 216.76■□□□□ 0.272e-6■■■■□ 20.3
CDC40O60508 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC15.52■□□□□ 0.082e-6■■■■□ 20.3
CDC40O60508 CCNL2-215ENST00000482621 2059 ntTSL 214.1□□□□□ -0.152e-6■■■■□ 20.3
CDC40O60508 CCNL2-218ENST00000496007 4452 ntTSL 212.48□□□□□ -0.412e-6■■■■□ 20.3
CDC40O60508 CCNL2-209ENST00000471930 846 ntTSL 511.9□□□□□ -0.52e-6■■■■□ 20.3
CDC40O60508 TRRAP-205ENST00000456197 11654 ntAPPRIS ALT2 TSL 1 (best)7.81□□□□□ -1.163e-10■■■■□ 20.3
CDC40O60508 TRRAP-202ENST00000359863 12677 ntAPPRIS ALT2 TSL 1 (best) BASIC7.47□□□□□ -1.213e-10■■■■□ 20.3
CDC40O60508 TRRAP-207ENST00000628380 12644 ntAPPRIS ALT2 TSL 5 BASIC7.4□□□□□ -1.223e-10■■■■□ 20.3
CDC40O60508 TRRAP-201ENST00000355540 12590 ntAPPRIS P3 TSL 1 (best) BASIC7.39□□□□□ -1.233e-10■■■■□ 20.3
CDC40O60508 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.483e-10■■■■□ 20.3
CDC40O60508 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.591e-10■■■■□ 20.3
CDC40O60508 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.181e-10■■■■□ 20.3
CDC40O60508 TRIB3-203ENST00000449710 1070 ntTSL 515.76■□□□□ 0.111e-10■■■■□ 20.3
CDC40O60508 PRKDC-203ENST00000432581 583 ntTSL 213.9□□□□□ -0.181e-10■■■■□ 20.3
CDC40O60508 PRKDC-204ENST00000521331 1087 ntTSL 213.9□□□□□ -0.181e-10■■■■□ 20.3
CDC40O60508 TRIB3-204ENST00000615226 877 ntTSL 34.8□□□□□ -1.641e-10■■■■□ 20.3
CDC40O60508 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.041e-7■■■■□ 20.2
CDC40O60508 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC22.84■■□□□ 1.251e-6■■■■□ 20.2
CDC40O60508 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.881e-6■■■■□ 20.2
CDC40O60508 CTBP1-208ENST00000506180 843 ntTSL 517.03■□□□□ 0.321e-6■■■■□ 20.2
CDC40O60508 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.292e-6■■■■□ 20.2
CDC40O60508 RRBP1-209ENST00000495501 832 ntTSL 518.59■□□□□ 0.574e-7■■■■□ 20.2
CDC40O60508 SKIV2L-207ENST00000471818 706 ntTSL 514.79□□□□□ -0.049e-7■■■■□ 20.2
CDC40O60508 SKIV2L-204ENST00000465703 4507 ntTSL 1 (best)14.49□□□□□ -0.099e-7■■■■□ 20.2
CDC40O60508 SKIV2L-209ENST00000483553 1307 ntTSL 514.46□□□□□ -0.099e-7■■■■□ 20.2
CDC40O60508 SKIV2L-213ENST00000491994 866 ntTSL 214.13□□□□□ -0.159e-7■■■■□ 20.2
Retrieved 100 of 5,364 protein–RNA pairs in 52.2 ms