Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AC004461.1-201ENST00000412461 403 ntBASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 LHX6-205ENST00000464484 666 ntTSL 2 BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 CXCL1P1-201ENST00000502804 216 ntBASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 AC068137.2-201ENST00000605408 478 ntBASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 BX276092.7-203ENST00000637198 1536 ntBASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDHGA1Q9Y5H4 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PCDHGA1Q9Y5H4 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PCDHGA1Q9Y5H4 AC009336.1-201ENST00000608941 1553 ntBASIC16.77■□□□□ 0.28
PCDHGA1Q9Y5H4 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
PCDHGA1Q9Y5H4 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PCDHGA1Q9Y5H4 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
PCDHGA1Q9Y5H4 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
PCDHGA1Q9Y5H4 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
PCDHGA1Q9Y5H4 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PCDHGA1Q9Y5H4 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PCDHGA1Q9Y5H4 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
PCDHGA1Q9Y5H4 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PCDHGA1Q9Y5H4 CD99-202ENST00000381180 530 ntTSL 2 BASIC16.77■□□□□ 0.28
PCDHGA1Q9Y5H4 LINC00982-205ENST00000420957 435 ntBASIC16.77■□□□□ 0.28
PCDHGA1Q9Y5H4 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC16.77■□□□□ 0.28
PCDHGA1Q9Y5H4 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC16.77■□□□□ 0.28
PCDHGA1Q9Y5H4 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC16.77■□□□□ 0.28
PCDHGA1Q9Y5H4 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC16.77■□□□□ 0.28
PCDHGA1Q9Y5H4 DAD1-205ENST00000543337 501 ntTSL 3 BASIC16.77■□□□□ 0.28
PCDHGA1Q9Y5H4 RPL28-205ENST00000558131 444 ntTSL 5 BASIC16.77■□□□□ 0.28
PCDHGA1Q9Y5H4 GREM1-201ENST00000560677 623 ntTSL 4 BASIC16.77■□□□□ 0.28
PCDHGA1Q9Y5H4 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PCDHGA1Q9Y5H4 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC16.77■□□□□ 0.28
PCDHGA1Q9Y5H4 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PCDHGA1Q9Y5H4 MED16-214ENST00000617672 554 ntTSL 5 BASIC16.77■□□□□ 0.28
PCDHGA1Q9Y5H4 AC093512.1-201ENST00000617969 520 ntBASIC16.77■□□□□ 0.28
PCDHGA1Q9Y5H4 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
PCDHGA1Q9Y5H4 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PCDHGA1Q9Y5H4 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC16.77■□□□□ 0.28
PCDHGA1Q9Y5H4 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PCDHGA1Q9Y5H4 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
PCDHGA1Q9Y5H4 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PCDHGA1Q9Y5H4 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC16.77■□□□□ 0.27
PCDHGA1Q9Y5H4 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC16.77■□□□□ 0.27
PCDHGA1Q9Y5H4 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC16.77■□□□□ 0.27
PCDHGA1Q9Y5H4 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC16.77■□□□□ 0.27
PCDHGA1Q9Y5H4 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC16.77■□□□□ 0.27
PCDHGA1Q9Y5H4 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
PCDHGA1Q9Y5H4 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
PCDHGA1Q9Y5H4 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA1Q9Y5H4 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC16.76■□□□□ 0.27
PCDHGA1Q9Y5H4 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA1Q9Y5H4 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA1Q9Y5H4 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA1Q9Y5H4 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA1Q9Y5H4 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA1Q9Y5H4 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA1Q9Y5H4 PTMS-202ENST00000389462 773 ntTSL 2 BASIC16.76■□□□□ 0.27
PCDHGA1Q9Y5H4 AC092474.2-201ENST00000424288 719 ntBASIC16.76■□□□□ 0.27
PCDHGA1Q9Y5H4 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC16.76■□□□□ 0.27
PCDHGA1Q9Y5H4 AC244107.1-201ENST00000442033 332 ntBASIC16.76■□□□□ 0.27
PCDHGA1Q9Y5H4 PAWRP1-201ENST00000451083 565 ntBASIC16.76■□□□□ 0.27
PCDHGA1Q9Y5H4 AC023141.5-201ENST00000458585 616 ntBASIC16.76■□□□□ 0.27
PCDHGA1Q9Y5H4 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC16.76■□□□□ 0.27
PCDHGA1Q9Y5H4 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC16.76■□□□□ 0.27
PCDHGA1Q9Y5H4 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA1Q9Y5H4 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA1Q9Y5H4 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
PCDHGA1Q9Y5H4 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA1Q9Y5H4 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA1Q9Y5H4 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC16.76■□□□□ 0.27
PCDHGA1Q9Y5H4 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA1Q9Y5H4 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA1Q9Y5H4 AC090340.1-201ENST00000620778 4980 ntBASIC16.76■□□□□ 0.27
PCDHGA1Q9Y5H4 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA1Q9Y5H4 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA1Q9Y5H4 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA1Q9Y5H4 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms