Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 TMPOP1-202ENST00000424642 1267 ntBASIC20.03■□□□□ 0.8
USP28Q96RU2 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
USP28Q96RU2 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
USP28Q96RU2 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC20.03■□□□□ 0.8
USP28Q96RU2 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC20.03■□□□□ 0.8
USP28Q96RU2 AL136038.3-201ENST00000561909 1096 ntBASIC20.03■□□□□ 0.8
USP28Q96RU2 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC20.03■□□□□ 0.8
USP28Q96RU2 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC20.03■□□□□ 0.8
USP28Q96RU2 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
USP28Q96RU2 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP28Q96RU2 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP28Q96RU2 AC092053.1-201ENST00000605787 1936 ntBASIC20.03■□□□□ 0.8
USP28Q96RU2 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
USP28Q96RU2 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP28Q96RU2 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
USP28Q96RU2 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
USP28Q96RU2 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USP28Q96RU2 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
USP28Q96RU2 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC20.02■□□□□ 0.8
USP28Q96RU2 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC20.02■□□□□ 0.8
USP28Q96RU2 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
USP28Q96RU2 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USP28Q96RU2 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USP28Q96RU2 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USP28Q96RU2 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC20.02■□□□□ 0.8
USP28Q96RU2 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC20.02■□□□□ 0.8
USP28Q96RU2 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
USP28Q96RU2 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
USP28Q96RU2 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC20.02■□□□□ 0.8
USP28Q96RU2 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC20.02■□□□□ 0.8
USP28Q96RU2 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
USP28Q96RU2 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USP28Q96RU2 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
USP28Q96RU2 AL049757.1-201ENST00000616842 1596 ntBASIC20.02■□□□□ 0.8
USP28Q96RU2 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
USP28Q96RU2 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USP28Q96RU2 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
USP28Q96RU2 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
USP28Q96RU2 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
USP28Q96RU2 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
USP28Q96RU2 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
USP28Q96RU2 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC20.02■□□□□ 0.79
USP28Q96RU2 LINC02012-201ENST00000608206 1725 ntBASIC20.02■□□□□ 0.79
USP28Q96RU2 AC093525.9-201ENST00000624961 1746 ntBASIC20.02■□□□□ 0.79
USP28Q96RU2 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
USP28Q96RU2 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
USP28Q96RU2 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC20.01■□□□□ 0.79
USP28Q96RU2 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP28Q96RU2 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP28Q96RU2 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
USP28Q96RU2 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
USP28Q96RU2 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
USP28Q96RU2 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP28Q96RU2 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP28Q96RU2 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP28Q96RU2 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC20.01■□□□□ 0.79
USP28Q96RU2 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC20.01■□□□□ 0.79
USP28Q96RU2 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC20.01■□□□□ 0.79
USP28Q96RU2 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC20.01■□□□□ 0.79
USP28Q96RU2 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC20.01■□□□□ 0.79
USP28Q96RU2 DAP-202ENST00000432074 1048 ntTSL 2 BASIC20.01■□□□□ 0.79
USP28Q96RU2 AC091607.1-201ENST00000490318 1060 ntBASIC20.01■□□□□ 0.79
USP28Q96RU2 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
USP28Q96RU2 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC20.01■□□□□ 0.79
USP28Q96RU2 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC20.01■□□□□ 0.79
USP28Q96RU2 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC20.01■□□□□ 0.79
USP28Q96RU2 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
USP28Q96RU2 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
USP28Q96RU2 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP28Q96RU2 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP28Q96RU2 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP28Q96RU2 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP28Q96RU2 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC20.01■□□□□ 0.79
USP28Q96RU2 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
USP28Q96RU2 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC20.01■□□□□ 0.79
USP28Q96RU2 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP28Q96RU2 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
USP28Q96RU2 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC20.01■□□□□ 0.79
USP28Q96RU2 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC20.01■□□□□ 0.79
USP28Q96RU2 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP28Q96RU2 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP28Q96RU2 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USP28Q96RU2 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USP28Q96RU2 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
USP28Q96RU2 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
USP28Q96RU2 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
USP28Q96RU2 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC20■□□□□ 0.79
USP28Q96RU2 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC20■□□□□ 0.79
USP28Q96RU2 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USP28Q96RU2 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC20■□□□□ 0.79
USP28Q96RU2 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.79
USP28Q96RU2 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC20■□□□□ 0.79
USP28Q96RU2 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC20■□□□□ 0.79
USP28Q96RU2 IGHV3-41-201ENST00000613121 348 ntBASIC20■□□□□ 0.79
USP28Q96RU2 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC20■□□□□ 0.79
USP28Q96RU2 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
USP28Q96RU2 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC20■□□□□ 0.79
USP28Q96RU2 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC20■□□□□ 0.79
USP28Q96RU2 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC20■□□□□ 0.79
USP28Q96RU2 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms