Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC17.41■□□□□ 0.38
VPS35Q96QK1 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC17.41■□□□□ 0.38
VPS35Q96QK1 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.41■□□□□ 0.38
VPS35Q96QK1 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS35Q96QK1 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VPS35Q96QK1 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS35Q96QK1 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.41■□□□□ 0.38
VPS35Q96QK1 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS35Q96QK1 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.41■□□□□ 0.38
VPS35Q96QK1 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
VPS35Q96QK1 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.4■□□□□ 0.38
VPS35Q96QK1 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS35Q96QK1 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VPS35Q96QK1 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC17.4■□□□□ 0.38
VPS35Q96QK1 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS35Q96QK1 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VPS35Q96QK1 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC17.4■□□□□ 0.38
VPS35Q96QK1 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS35Q96QK1 AC003669.1-201ENST00000334569 611 ntBASIC17.4■□□□□ 0.38
VPS35Q96QK1 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS35Q96QK1 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
VPS35Q96QK1 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS35Q96QK1 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC17.4■□□□□ 0.38
VPS35Q96QK1 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC17.4■□□□□ 0.38
VPS35Q96QK1 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC17.4■□□□□ 0.38
VPS35Q96QK1 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS35Q96QK1 EMBP1-201ENST00000458200 901 ntBASIC17.4■□□□□ 0.38
VPS35Q96QK1 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC17.4■□□□□ 0.38
VPS35Q96QK1 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC17.4■□□□□ 0.38
VPS35Q96QK1 AC073592.4-201ENST00000623827 446 ntBASIC17.4■□□□□ 0.38
VPS35Q96QK1 AC073592.5-201ENST00000624854 528 ntBASIC17.4■□□□□ 0.38
VPS35Q96QK1 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC17.4■□□□□ 0.38
VPS35Q96QK1 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VPS35Q96QK1 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.4■□□□□ 0.38
VPS35Q96QK1 AL355312.1-201ENST00000407115 2176 ntBASIC17.4■□□□□ 0.38
VPS35Q96QK1 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.4■□□□□ 0.38
VPS35Q96QK1 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
VPS35Q96QK1 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
VPS35Q96QK1 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS35Q96QK1 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
VPS35Q96QK1 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.38
VPS35Q96QK1 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.38
VPS35Q96QK1 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.38
VPS35Q96QK1 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
VPS35Q96QK1 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS35Q96QK1 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
VPS35Q96QK1 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS35Q96QK1 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS35Q96QK1 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS35Q96QK1 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
VPS35Q96QK1 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS35Q96QK1 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS35Q96QK1 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC17.39■□□□□ 0.37
VPS35Q96QK1 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.39■□□□□ 0.37
VPS35Q96QK1 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS35Q96QK1 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.39■□□□□ 0.37
VPS35Q96QK1 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS35Q96QK1 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC17.39■□□□□ 0.37
VPS35Q96QK1 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS35Q96QK1 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS35Q96QK1 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC17.39■□□□□ 0.37
VPS35Q96QK1 TPM4P1-201ENST00000436100 807 ntBASIC17.39■□□□□ 0.37
VPS35Q96QK1 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC17.39■□□□□ 0.37
VPS35Q96QK1 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
VPS35Q96QK1 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC17.39■□□□□ 0.37
VPS35Q96QK1 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC17.39■□□□□ 0.37
VPS35Q96QK1 AF238378.1-201ENST00000526806 358 ntBASIC17.39■□□□□ 0.37
VPS35Q96QK1 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC17.39■□□□□ 0.37
VPS35Q96QK1 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
VPS35Q96QK1 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
VPS35Q96QK1 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC17.39■□□□□ 0.37
VPS35Q96QK1 AC008608.2-201ENST00000606089 416 ntBASIC17.39■□□□□ 0.37
VPS35Q96QK1 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS35Q96QK1 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
VPS35Q96QK1 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS35Q96QK1 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.39■□□□□ 0.37
VPS35Q96QK1 AC132938.5-201ENST00000624980 1813 ntBASIC17.39■□□□□ 0.37
VPS35Q96QK1 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS35Q96QK1 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
VPS35Q96QK1 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS35Q96QK1 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.37
VPS35Q96QK1 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
VPS35Q96QK1 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.39■□□□□ 0.37
VPS35Q96QK1 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
VPS35Q96QK1 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS35Q96QK1 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.39■□□□□ 0.37
VPS35Q96QK1 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC17.39■□□□□ 0.37
VPS35Q96QK1 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.39■□□□□ 0.37
VPS35Q96QK1 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS35Q96QK1 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.39■□□□□ 0.37
VPS35Q96QK1 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.39■□□□□ 0.37
VPS35Q96QK1 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.39■□□□□ 0.37
VPS35Q96QK1 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS35Q96QK1 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS35Q96QK1 SIGLEC16-201ENST00000599858 1437 ntBASIC17.38■□□□□ 0.37
VPS35Q96QK1 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.38■□□□□ 0.37
VPS35Q96QK1 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS35Q96QK1 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.38■□□□□ 0.37
VPS35Q96QK1 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS35Q96QK1 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms