Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC10.71□□□□□ -0.7
HSPG2P98160 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
HSPG2P98160 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC10.71□□□□□ -0.7
HSPG2P98160 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
HSPG2P98160 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC10.71□□□□□ -0.7
HSPG2P98160 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC10.71□□□□□ -0.7
HSPG2P98160 COBL-210ENST00000632460 1941 ntTSL 5 BASIC10.71□□□□□ -0.7
HSPG2P98160 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC10.7□□□□□ -0.7
HSPG2P98160 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC10.7□□□□□ -0.7
HSPG2P98160 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
HSPG2P98160 SNCG-201ENST00000348795 684 ntTSL 2 BASIC10.7□□□□□ -0.7
HSPG2P98160 HAUS4P1-201ENST00000406739 1145 ntBASIC10.7□□□□□ -0.7
HSPG2P98160 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
HSPG2P98160 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC10.7□□□□□ -0.7
HSPG2P98160 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC10.7□□□□□ -0.7
HSPG2P98160 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC10.7□□□□□ -0.7
HSPG2P98160 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC10.7□□□□□ -0.7
HSPG2P98160 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC10.7□□□□□ -0.7
HSPG2P98160 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC10.7□□□□□ -0.7
HSPG2P98160 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
HSPG2P98160 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC10.7□□□□□ -0.7
HSPG2P98160 WASH6P-202ENST00000359512 1437 ntBASIC10.7□□□□□ -0.7
HSPG2P98160 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
HSPG2P98160 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC10.7□□□□□ -0.7
HSPG2P98160 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC10.7□□□□□ -0.7
HSPG2P98160 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
HSPG2P98160 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
HSPG2P98160 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC10.7□□□□□ -0.7
HSPG2P98160 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
HSPG2P98160 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
HSPG2P98160 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
HSPG2P98160 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC10.7□□□□□ -0.7
HSPG2P98160 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC10.7□□□□□ -0.7
HSPG2P98160 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC10.7□□□□□ -0.7
HSPG2P98160 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC10.7□□□□□ -0.7
HSPG2P98160 TPI1-206ENST00000488464 791 ntTSL 5 BASIC10.7□□□□□ -0.7
HSPG2P98160 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
HSPG2P98160 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC10.7□□□□□ -0.7
HSPG2P98160 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
HSPG2P98160 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC10.7□□□□□ -0.7
HSPG2P98160 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
HSPG2P98160 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC10.7□□□□□ -0.7
HSPG2P98160 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC10.7□□□□□ -0.7
HSPG2P98160 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC10.7□□□□□ -0.7
HSPG2P98160 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
HSPG2P98160 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
HSPG2P98160 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
HSPG2P98160 AC099548.2-209ENST00000480264 625 ntBASIC10.7□□□□□ -0.7
HSPG2P98160 IGHV3-62-201ENST00000520057 340 ntBASIC10.7□□□□□ -0.7
HSPG2P98160 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
HSPG2P98160 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
HSPG2P98160 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC10.7□□□□□ -0.7
HSPG2P98160 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC10.7□□□□□ -0.7
HSPG2P98160 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC10.7□□□□□ -0.7
HSPG2P98160 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
HSPG2P98160 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC10.7□□□□□ -0.7
HSPG2P98160 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
HSPG2P98160 PC-208ENST00000529047 1607 ntTSL 3 BASIC10.7□□□□□ -0.7
HSPG2P98160 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
HSPG2P98160 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
HSPG2P98160 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
HSPG2P98160 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC10.7□□□□□ -0.7
HSPG2P98160 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC10.7□□□□□ -0.7
HSPG2P98160 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC10.7□□□□□ -0.7
HSPG2P98160 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC10.7□□□□□ -0.7
HSPG2P98160 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC10.7□□□□□ -0.7
HSPG2P98160 RNA5-8SN1-201ENST00000610460 153 ntBASIC10.7□□□□□ -0.7
HSPG2P98160 RNA5-8SN5-202ENST00000612463 153 ntBASIC10.7□□□□□ -0.7
HSPG2P98160 RNA5-8SN4-201ENST00000613359 153 ntBASIC10.7□□□□□ -0.7
HSPG2P98160 RNA5-8SN5-201ENST00000619471 153 ntBASIC10.7□□□□□ -0.7
HSPG2P98160 AC073592.8-201ENST00000624126 511 ntBASIC10.7□□□□□ -0.7
HSPG2P98160 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC10.7□□□□□ -0.7
HSPG2P98160 AC093677.2-201ENST00000600169 1863 ntBASIC10.7□□□□□ -0.7
HSPG2P98160 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
HSPG2P98160 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC10.69□□□□□ -0.7
HSPG2P98160 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC10.69□□□□□ -0.7
HSPG2P98160 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
HSPG2P98160 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
HSPG2P98160 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC10.69□□□□□ -0.7
HSPG2P98160 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
HSPG2P98160 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
HSPG2P98160 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
HSPG2P98160 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC10.69□□□□□ -0.7
HSPG2P98160 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC10.69□□□□□ -0.7
HSPG2P98160 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC10.69□□□□□ -0.7
HSPG2P98160 LY6E-204ENST00000519546 971 ntTSL 2 BASIC10.69□□□□□ -0.7
HSPG2P98160 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC10.69□□□□□ -0.7
HSPG2P98160 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC10.69□□□□□ -0.7
HSPG2P98160 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC10.69□□□□□ -0.7
HSPG2P98160 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC10.69□□□□□ -0.7
HSPG2P98160 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
HSPG2P98160 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC10.69□□□□□ -0.7
HSPG2P98160 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC10.69□□□□□ -0.7
HSPG2P98160 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
HSPG2P98160 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
HSPG2P98160 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC10.69□□□□□ -0.7
HSPG2P98160 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC10.69□□□□□ -0.7
HSPG2P98160 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
HSPG2P98160 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
HSPG2P98160 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms