Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 AC211486.1-202ENST00000416371 468 ntBASIC20.61■□□□□ 0.89
RHBDL3P58872 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC20.61■□□□□ 0.89
RHBDL3P58872 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC20.61■□□□□ 0.89
RHBDL3P58872 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC20.61■□□□□ 0.89
RHBDL3P58872 AC211476.1-201ENST00000503899 468 ntBASIC20.61■□□□□ 0.89
RHBDL3P58872 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC20.61■□□□□ 0.89
RHBDL3P58872 MIR4469-201ENST00000583919 79 ntBASIC20.61■□□□□ 0.89
RHBDL3P58872 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC20.61■□□□□ 0.89
RHBDL3P58872 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.61■□□□□ 0.89
RHBDL3P58872 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RHBDL3P58872 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC20.61■□□□□ 0.89
RHBDL3P58872 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RHBDL3P58872 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RHBDL3P58872 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC20.61■□□□□ 0.89
RHBDL3P58872 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RHBDL3P58872 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
RHBDL3P58872 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
RHBDL3P58872 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
RHBDL3P58872 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC20.61■□□□□ 0.89
RHBDL3P58872 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RHBDL3P58872 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC20.6■□□□□ 0.89
RHBDL3P58872 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
RHBDL3P58872 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
RHBDL3P58872 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
RHBDL3P58872 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
RHBDL3P58872 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RHBDL3P58872 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
RHBDL3P58872 HTR5BP-201ENST00000430851 1154 ntBASIC20.6■□□□□ 0.89
RHBDL3P58872 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC20.6■□□□□ 0.89
RHBDL3P58872 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
RHBDL3P58872 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC20.6■□□□□ 0.89
RHBDL3P58872 AL078644.1-201ENST00000609881 752 ntBASIC20.6■□□□□ 0.89
RHBDL3P58872 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
RHBDL3P58872 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RHBDL3P58872 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
RHBDL3P58872 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC20.6■□□□□ 0.89
RHBDL3P58872 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
RHBDL3P58872 AC025580.3-201ENST00000617932 1424 ntBASIC20.6■□□□□ 0.89
RHBDL3P58872 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
RHBDL3P58872 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RHBDL3P58872 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RHBDL3P58872 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.59■□□□□ 0.89
RHBDL3P58872 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
RHBDL3P58872 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC20.59■□□□□ 0.89
RHBDL3P58872 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
RHBDL3P58872 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
RHBDL3P58872 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RHBDL3P58872 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
RHBDL3P58872 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RHBDL3P58872 NABP1-203ENST00000409510 843 ntTSL 5 BASIC20.59■□□□□ 0.89
RHBDL3P58872 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC20.59■□□□□ 0.89
RHBDL3P58872 SLC25A6P2-201ENST00000497974 877 ntBASIC20.59■□□□□ 0.89
RHBDL3P58872 CD63-210ENST00000550776 870 ntTSL 5 BASIC20.59■□□□□ 0.89
RHBDL3P58872 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RHBDL3P58872 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC20.59■□□□□ 0.89
RHBDL3P58872 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RHBDL3P58872 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC20.59■□□□□ 0.89
RHBDL3P58872 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
RHBDL3P58872 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC20.59■□□□□ 0.89
RHBDL3P58872 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC20.59■□□□□ 0.89
RHBDL3P58872 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
RHBDL3P58872 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RHBDL3P58872 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC20.59■□□□□ 0.89
RHBDL3P58872 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RHBDL3P58872 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
RHBDL3P58872 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
RHBDL3P58872 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
RHBDL3P58872 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
RHBDL3P58872 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RHBDL3P58872 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
RHBDL3P58872 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RHBDL3P58872 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC20.59■□□□□ 0.89
RHBDL3P58872 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RHBDL3P58872 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC20.58■□□□□ 0.89
RHBDL3P58872 AL355312.1-201ENST00000407115 2176 ntBASIC20.58■□□□□ 0.89
RHBDL3P58872 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RHBDL3P58872 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC20.58■□□□□ 0.89
RHBDL3P58872 MKNK2P1-201ENST00000437526 628 ntBASIC20.58■□□□□ 0.89
RHBDL3P58872 FAM185BP-201ENST00000443595 716 ntBASIC20.58■□□□□ 0.89
RHBDL3P58872 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
RHBDL3P58872 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC20.58■□□□□ 0.89
RHBDL3P58872 CXCL1P1-201ENST00000502804 216 ntBASIC20.58■□□□□ 0.89
RHBDL3P58872 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
RHBDL3P58872 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC20.58■□□□□ 0.89
RHBDL3P58872 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC20.58■□□□□ 0.89
RHBDL3P58872 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
RHBDL3P58872 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
RHBDL3P58872 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
RHBDL3P58872 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
RHBDL3P58872 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
RHBDL3P58872 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
RHBDL3P58872 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
RHBDL3P58872 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RHBDL3P58872 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC20.57■□□□□ 0.88
RHBDL3P58872 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC20.57■□□□□ 0.88
RHBDL3P58872 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC20.57■□□□□ 0.88
RHBDL3P58872 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
RHBDL3P58872 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RHBDL3P58872 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RHBDL3P58872 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms