Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HMGB3O15347 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HMGB3O15347 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
HMGB3O15347 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HMGB3O15347 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HMGB3O15347 UROS-202ENST00000368778 1556 ntTSL 2 BASIC14.15□□□□□ -0.14
HMGB3O15347 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HMGB3O15347 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HMGB3O15347 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HMGB3O15347 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HMGB3O15347 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HMGB3O15347 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HMGB3O15347 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HMGB3O15347 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
HMGB3O15347 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC14.15□□□□□ -0.14
HMGB3O15347 AL162430.1-201ENST00000480705 870 ntBASIC14.15□□□□□ -0.14
HMGB3O15347 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC14.15□□□□□ -0.14
HMGB3O15347 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC14.15□□□□□ -0.14
HMGB3O15347 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HMGB3O15347 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC14.15□□□□□ -0.14
HMGB3O15347 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HMGB3O15347 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HMGB3O15347 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC14.15□□□□□ -0.14
HMGB3O15347 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC14.15□□□□□ -0.14
HMGB3O15347 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC14.15□□□□□ -0.14
HMGB3O15347 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
HMGB3O15347 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
HMGB3O15347 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
HMGB3O15347 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HMGB3O15347 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
HMGB3O15347 FLJ38576-201ENST00000623820 2459 ntBASIC14.15□□□□□ -0.14
HMGB3O15347 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HMGB3O15347 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HMGB3O15347 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC14.15□□□□□ -0.14
HMGB3O15347 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC14.15□□□□□ -0.14
HMGB3O15347 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
HMGB3O15347 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
HMGB3O15347 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
HMGB3O15347 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
HMGB3O15347 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC14.14□□□□□ -0.15
HMGB3O15347 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HMGB3O15347 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HMGB3O15347 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HMGB3O15347 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC14.14□□□□□ -0.15
HMGB3O15347 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
HMGB3O15347 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HMGB3O15347 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HMGB3O15347 AGGF1P2-201ENST00000426656 2106 ntBASIC14.14□□□□□ -0.15
HMGB3O15347 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HMGB3O15347 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HMGB3O15347 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HMGB3O15347 FLT4-201ENST00000261937 5857 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HMGB3O15347 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
HMGB3O15347 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HMGB3O15347 ACACA-237ENST00000616317 9961 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HMGB3O15347 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HMGB3O15347 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
HMGB3O15347 MIR564-202ENST00000385049 94 ntBASIC14.14□□□□□ -0.15
HMGB3O15347 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC14.14□□□□□ -0.15
HMGB3O15347 POM121L13P-201ENST00000422362 380 ntBASIC14.14□□□□□ -0.15
HMGB3O15347 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC14.14□□□□□ -0.15
HMGB3O15347 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
HMGB3O15347 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC14.14□□□□□ -0.15
HMGB3O15347 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC14.14□□□□□ -0.15
HMGB3O15347 AC091390.4-202ENST00000476426 537 ntBASIC14.14□□□□□ -0.15
HMGB3O15347 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HMGB3O15347 AC083880.1-201ENST00000608266 535 ntBASIC14.14□□□□□ -0.15
HMGB3O15347 AC131212.4-201ENST00000623606 975 ntBASIC14.14□□□□□ -0.15
HMGB3O15347 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC14.14□□□□□ -0.15
HMGB3O15347 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC14.14□□□□□ -0.15
HMGB3O15347 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC14.14□□□□□ -0.15
HMGB3O15347 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
HMGB3O15347 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
HMGB3O15347 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HMGB3O15347 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
HMGB3O15347 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC14.14□□□□□ -0.15
HMGB3O15347 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC14.14□□□□□ -0.15
HMGB3O15347 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
HMGB3O15347 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
HMGB3O15347 DOC2GP-204ENST00000639052 2548 ntBASIC14.14□□□□□ -0.15
HMGB3O15347 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HMGB3O15347 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
HMGB3O15347 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HMGB3O15347 AC133963.1-201ENST00000504166 1679 ntBASIC14.14□□□□□ -0.15
HMGB3O15347 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HMGB3O15347 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC14.13□□□□□ -0.15
HMGB3O15347 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC14.13□□□□□ -0.15
HMGB3O15347 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
HMGB3O15347 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HMGB3O15347 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HMGB3O15347 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HMGB3O15347 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HMGB3O15347 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HMGB3O15347 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HMGB3O15347 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HMGB3O15347 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HMGB3O15347 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HMGB3O15347 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HMGB3O15347 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HMGB3O15347 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms