Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
TRIM49D1C9J1S8 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM49D1C9J1S8 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM49D1C9J1S8 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM49D1C9J1S8 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM49D1C9J1S8 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM49D1C9J1S8 LINC01568-207ENST00000641790 1380 ntBASIC17.59■□□□□ 0.41
TRIM49D1C9J1S8 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM49D1C9J1S8 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM49D1C9J1S8 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC17.59■□□□□ 0.41
TRIM49D1C9J1S8 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM49D1C9J1S8 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM49D1C9J1S8 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM49D1C9J1S8 KRT18P48-201ENST00000434763 852 ntBASIC17.59■□□□□ 0.41
TRIM49D1C9J1S8 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC17.59■□□□□ 0.41
TRIM49D1C9J1S8 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM49D1C9J1S8 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC17.59■□□□□ 0.41
TRIM49D1C9J1S8 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM49D1C9J1S8 AL139327.4-201ENST00000612362 153 ntBASIC17.59■□□□□ 0.41
TRIM49D1C9J1S8 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM49D1C9J1S8 AL023973.1-201ENST00000624619 620 ntBASIC17.59■□□□□ 0.41
TRIM49D1C9J1S8 AP006294.2-201ENST00000641667 209 ntBASIC17.59■□□□□ 0.41
TRIM49D1C9J1S8 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM49D1C9J1S8 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM49D1C9J1S8 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.59■□□□□ 0.41
TRIM49D1C9J1S8 FLJ38576-201ENST00000623820 2459 ntBASIC17.59■□□□□ 0.41
TRIM49D1C9J1S8 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM49D1C9J1S8 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM49D1C9J1S8 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.59■□□□□ 0.41
TRIM49D1C9J1S8 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.59■□□□□ 0.41
TRIM49D1C9J1S8 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM49D1C9J1S8 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.59■□□□□ 0.41
TRIM49D1C9J1S8 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM49D1C9J1S8 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM49D1C9J1S8 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
TRIM49D1C9J1S8 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TRIM49D1C9J1S8 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC17.58■□□□□ 0.41
TRIM49D1C9J1S8 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TRIM49D1C9J1S8 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
TRIM49D1C9J1S8 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.41
TRIM49D1C9J1S8 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TRIM49D1C9J1S8 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
TRIM49D1C9J1S8 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TRIM49D1C9J1S8 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
TRIM49D1C9J1S8 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM49D1C9J1S8 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC17.58■□□□□ 0.4
TRIM49D1C9J1S8 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
TRIM49D1C9J1S8 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC17.58■□□□□ 0.4
TRIM49D1C9J1S8 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM49D1C9J1S8 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC17.58■□□□□ 0.4
TRIM49D1C9J1S8 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM49D1C9J1S8 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM49D1C9J1S8 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM49D1C9J1S8 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.58■□□□□ 0.4
TRIM49D1C9J1S8 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC17.58■□□□□ 0.4
TRIM49D1C9J1S8 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM49D1C9J1S8 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM49D1C9J1S8 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM49D1C9J1S8 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.58■□□□□ 0.4
TRIM49D1C9J1S8 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.58■□□□□ 0.4
TRIM49D1C9J1S8 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM49D1C9J1S8 AC046185.3-201ENST00000623228 1824 ntBASIC17.58■□□□□ 0.4
TRIM49D1C9J1S8 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM49D1C9J1S8 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM49D1C9J1S8 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM49D1C9J1S8 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM49D1C9J1S8 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM49D1C9J1S8 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM49D1C9J1S8 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM49D1C9J1S8 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
TRIM49D1C9J1S8 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM49D1C9J1S8 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM49D1C9J1S8 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.57■□□□□ 0.4
TRIM49D1C9J1S8 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM49D1C9J1S8 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM49D1C9J1S8 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM49D1C9J1S8 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM49D1C9J1S8 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM49D1C9J1S8 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
TRIM49D1C9J1S8 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM49D1C9J1S8 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM49D1C9J1S8 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM49D1C9J1S8 CD70-202ENST00000423145 881 ntTSL 2 BASIC17.57■□□□□ 0.4
TRIM49D1C9J1S8 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
TRIM49D1C9J1S8 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC17.57■□□□□ 0.4
TRIM49D1C9J1S8 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
TRIM49D1C9J1S8 TMA16-209ENST00000513272 803 ntTSL 2 BASIC17.57■□□□□ 0.4
TRIM49D1C9J1S8 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC17.57■□□□□ 0.4
TRIM49D1C9J1S8 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC17.57■□□□□ 0.4
TRIM49D1C9J1S8 GXYLT1P4-201ENST00000613576 1192 ntBASIC17.57■□□□□ 0.4
TRIM49D1C9J1S8 AL138966.2-201ENST00000621997 464 ntBASIC17.57■□□□□ 0.4
TRIM49D1C9J1S8 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC17.57■□□□□ 0.4
TRIM49D1C9J1S8 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
TRIM49D1C9J1S8 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
TRIM49D1C9J1S8 OS9-205ENST00000413095 1660 ntTSL 2 BASIC17.57■□□□□ 0.4
TRIM49D1C9J1S8 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM49D1C9J1S8 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM49D1C9J1S8 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC17.57■□□□□ 0.4
TRIM49D1C9J1S8 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM49D1C9J1S8 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms