Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC85CA6NKD9 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC85CA6NKD9 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC19.19■□□□□ 0.66
CCDC85CA6NKD9 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC19.19■□□□□ 0.66
CCDC85CA6NKD9 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC19.19■□□□□ 0.66
CCDC85CA6NKD9 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC19.19■□□□□ 0.66
CCDC85CA6NKD9 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC19.19■□□□□ 0.66
CCDC85CA6NKD9 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC19.19■□□□□ 0.66
CCDC85CA6NKD9 STK25P1-201ENST00000585406 838 ntBASIC19.19■□□□□ 0.66
CCDC85CA6NKD9 RPS15-212ENST00000593052 629 ntTSL 2 BASIC19.19■□□□□ 0.66
CCDC85CA6NKD9 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC19.19■□□□□ 0.66
CCDC85CA6NKD9 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC19.19■□□□□ 0.66
CCDC85CA6NKD9 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC85CA6NKD9 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC19.19■□□□□ 0.66
CCDC85CA6NKD9 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
CCDC85CA6NKD9 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.19■□□□□ 0.66
CCDC85CA6NKD9 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC85CA6NKD9 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CCDC85CA6NKD9 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC19.19■□□□□ 0.66
CCDC85CA6NKD9 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.19■□□□□ 0.66
CCDC85CA6NKD9 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC85CA6NKD9 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC85CA6NKD9 TUBB1P2-201ENST00000422712 1306 ntBASIC19.19■□□□□ 0.66
CCDC85CA6NKD9 TUBB1P1-201ENST00000503144 1300 ntBASIC19.19■□□□□ 0.66
CCDC85CA6NKD9 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC85CA6NKD9 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.19■□□□□ 0.66
CCDC85CA6NKD9 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC85CA6NKD9 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC19.18■□□□□ 0.66
CCDC85CA6NKD9 AC132938.6-201ENST00000623828 1655 ntBASIC19.18■□□□□ 0.66
CCDC85CA6NKD9 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC85CA6NKD9 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC19.18■□□□□ 0.66
CCDC85CA6NKD9 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC85CA6NKD9 MIR346-201ENST00000362234 95 ntBASIC19.18■□□□□ 0.66
CCDC85CA6NKD9 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC85CA6NKD9 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC19.18■□□□□ 0.66
CCDC85CA6NKD9 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC19.18■□□□□ 0.66
CCDC85CA6NKD9 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
CCDC85CA6NKD9 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC19.18■□□□□ 0.66
CCDC85CA6NKD9 AC007967.4-201ENST00000614700 386 ntBASIC19.18■□□□□ 0.66
CCDC85CA6NKD9 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC19.18■□□□□ 0.66
CCDC85CA6NKD9 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC85CA6NKD9 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
CCDC85CA6NKD9 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
CCDC85CA6NKD9 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC85CA6NKD9 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CCDC85CA6NKD9 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
CCDC85CA6NKD9 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC85CA6NKD9 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
CCDC85CA6NKD9 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC85CA6NKD9 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC19.17■□□□□ 0.66
CCDC85CA6NKD9 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC19.17■□□□□ 0.66
CCDC85CA6NKD9 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC85CA6NKD9 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC19.17■□□□□ 0.66
CCDC85CA6NKD9 AC007389.4-201ENST00000454674 793 ntBASIC19.17■□□□□ 0.66
CCDC85CA6NKD9 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC19.17■□□□□ 0.66
CCDC85CA6NKD9 AC093004.1-201ENST00000508850 424 ntBASIC19.17■□□□□ 0.66
CCDC85CA6NKD9 MIR4515-201ENST00000584082 81 ntBASIC19.17■□□□□ 0.66
CCDC85CA6NKD9 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC19.17■□□□□ 0.66
CCDC85CA6NKD9 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC19.17■□□□□ 0.66
CCDC85CA6NKD9 AL021578.1-201ENST00000613646 709 ntBASIC19.17■□□□□ 0.66
CCDC85CA6NKD9 RPS24-214ENST00000613865 538 ntTSL 5 BASIC19.17■□□□□ 0.66
CCDC85CA6NKD9 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC85CA6NKD9 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC19.17■□□□□ 0.66
CCDC85CA6NKD9 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC85CA6NKD9 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC85CA6NKD9 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC19.17■□□□□ 0.66
CCDC85CA6NKD9 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC85CA6NKD9 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC85CA6NKD9 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC85CA6NKD9 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC85CA6NKD9 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC19.16■□□□□ 0.66
CCDC85CA6NKD9 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC85CA6NKD9 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC19.16■□□□□ 0.66
CCDC85CA6NKD9 PWWP2AP1-201ENST00000429776 2273 ntBASIC19.16■□□□□ 0.66
CCDC85CA6NKD9 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC85CA6NKD9 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
CCDC85CA6NKD9 AC009336.1-201ENST00000608941 1553 ntBASIC19.16■□□□□ 0.66
CCDC85CA6NKD9 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.16■□□□□ 0.66
CCDC85CA6NKD9 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC85CA6NKD9 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
CCDC85CA6NKD9 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC85CA6NKD9 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC85CA6NKD9 MIR1247-201ENST00000408206 136 ntBASIC19.16■□□□□ 0.66
CCDC85CA6NKD9 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC85CA6NKD9 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC19.16■□□□□ 0.66
CCDC85CA6NKD9 GPAA1P2-201ENST00000417923 928 ntBASIC19.16■□□□□ 0.66
CCDC85CA6NKD9 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC19.16■□□□□ 0.66
CCDC85CA6NKD9 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC19.16■□□□□ 0.66
CCDC85CA6NKD9 PFN1P12-201ENST00000455938 534 ntBASIC19.16■□□□□ 0.66
CCDC85CA6NKD9 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC19.16■□□□□ 0.66
CCDC85CA6NKD9 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC19.16■□□□□ 0.66
CCDC85CA6NKD9 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC19.16■□□□□ 0.66
CCDC85CA6NKD9 DOC2GP-202ENST00000514950 1163 ntBASIC19.16■□□□□ 0.66
CCDC85CA6NKD9 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC19.16■□□□□ 0.66
CCDC85CA6NKD9 AC026740.1-201ENST00000607068 791 ntBASIC19.16■□□□□ 0.66
CCDC85CA6NKD9 AL844908.2-201ENST00000609461 460 ntBASIC19.16■□□□□ 0.66
CCDC85CA6NKD9 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC85CA6NKD9 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC85CA6NKD9 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC85CA6NKD9 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms