Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHB3Q9Y5E6 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.22■□□□□ 0.35
PCDHB3Q9Y5E6 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
PCDHB3Q9Y5E6 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHB3Q9Y5E6 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
PCDHB3Q9Y5E6 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHB3Q9Y5E6 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHB3Q9Y5E6 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
PCDHB3Q9Y5E6 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHB3Q9Y5E6 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHB3Q9Y5E6 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHB3Q9Y5E6 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHB3Q9Y5E6 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
PCDHB3Q9Y5E6 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHB3Q9Y5E6 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC17.22■□□□□ 0.35
PCDHB3Q9Y5E6 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC17.22■□□□□ 0.35
PCDHB3Q9Y5E6 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC17.22■□□□□ 0.35
PCDHB3Q9Y5E6 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC17.22■□□□□ 0.35
PCDHB3Q9Y5E6 FICD-205ENST00000552758 603 ntTSL 2 BASIC17.22■□□□□ 0.35
PCDHB3Q9Y5E6 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC17.22■□□□□ 0.35
PCDHB3Q9Y5E6 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC17.22■□□□□ 0.35
PCDHB3Q9Y5E6 CALM3-211ENST00000598871 561 ntTSL 4 BASIC17.22■□□□□ 0.35
PCDHB3Q9Y5E6 AC064862.7-201ENST00000604520 867 ntBASIC17.22■□□□□ 0.35
PCDHB3Q9Y5E6 CCNC-219ENST00000627680 896 ntTSL 5 BASIC17.22■□□□□ 0.35
PCDHB3Q9Y5E6 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHB3Q9Y5E6 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
PCDHB3Q9Y5E6 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.22■□□□□ 0.35
PCDHB3Q9Y5E6 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC17.22■□□□□ 0.35
PCDHB3Q9Y5E6 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHB3Q9Y5E6 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHB3Q9Y5E6 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.22■□□□□ 0.35
PCDHB3Q9Y5E6 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC17.22■□□□□ 0.35
PCDHB3Q9Y5E6 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHB3Q9Y5E6 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHB3Q9Y5E6 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDHB3Q9Y5E6 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17.22■□□□□ 0.35
PCDHB3Q9Y5E6 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.22■□□□□ 0.35
PCDHB3Q9Y5E6 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 BANP-227ENST00000626016 2144 ntTSL 2 BASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 AC124067.4-201ENST00000519691 2379 ntBASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 POM121L3P-201ENST00000419331 1163 ntBASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 MINOS1P3-201ENST00000457048 203 ntBASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 BET1L-206ENST00000486280 665 ntTSL 3 BASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 AP002469.2-201ENST00000531724 424 ntBASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 AC093010.1-201ENST00000473625 1624 ntBASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 AL023806.1-201ENST00000603994 1649 ntBASIC17.21■□□□□ 0.35
PCDHB3Q9Y5E6 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC17.21■□□□□ 0.34
PCDHB3Q9Y5E6 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC17.21■□□□□ 0.34
PCDHB3Q9Y5E6 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.2■□□□□ 0.34
PCDHB3Q9Y5E6 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHB3Q9Y5E6 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHB3Q9Y5E6 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHB3Q9Y5E6 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC17.2■□□□□ 0.34
PCDHB3Q9Y5E6 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
PCDHB3Q9Y5E6 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHB3Q9Y5E6 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHB3Q9Y5E6 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHB3Q9Y5E6 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHB3Q9Y5E6 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHB3Q9Y5E6 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
PCDHB3Q9Y5E6 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.2■□□□□ 0.34
PCDHB3Q9Y5E6 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHB3Q9Y5E6 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC17.2■□□□□ 0.34
PCDHB3Q9Y5E6 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC17.2■□□□□ 0.34
PCDHB3Q9Y5E6 AP000347.1-202ENST00000435868 847 ntBASIC17.2■□□□□ 0.34
PCDHB3Q9Y5E6 AC091607.1-201ENST00000490318 1060 ntBASIC17.2■□□□□ 0.34
PCDHB3Q9Y5E6 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC17.2■□□□□ 0.34
PCDHB3Q9Y5E6 CALM1-205ENST00000553542 877 ntTSL 5 BASIC17.2■□□□□ 0.34
PCDHB3Q9Y5E6 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC17.2■□□□□ 0.34
PCDHB3Q9Y5E6 AC009154.2-201ENST00000621177 724 ntBASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms