Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 HARS-201ENST00000307633 1780 ntTSL 2 BASIC33.13■■■□□ 2.89
SHROOM4Q9ULL8 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC33.13■■■□□ 2.89
SHROOM4Q9ULL8 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC33.13■■■□□ 2.89
SHROOM4Q9ULL8 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC33.12■■■□□ 2.89
SHROOM4Q9ULL8 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC33.12■■■□□ 2.89
SHROOM4Q9ULL8 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC33.12■■■□□ 2.89
SHROOM4Q9ULL8 SLBP-205ENST00000488267 987 ntTSL 2 BASIC33.12■■■□□ 2.89
SHROOM4Q9ULL8 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC33.12■■■□□ 2.89
SHROOM4Q9ULL8 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC33.12■■■□□ 2.89
SHROOM4Q9ULL8 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC33.12■■■□□ 2.89
SHROOM4Q9ULL8 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC33.12■■■□□ 2.89
SHROOM4Q9ULL8 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC33.12■■■□□ 2.89
SHROOM4Q9ULL8 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC33.12■■■□□ 2.89
SHROOM4Q9ULL8 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC33.12■■■□□ 2.89
SHROOM4Q9ULL8 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC33.12■■■□□ 2.89
SHROOM4Q9ULL8 AL121761.2-201ENST00000598007 1648 ntBASIC33.12■■■□□ 2.89
SHROOM4Q9ULL8 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC33.12■■■□□ 2.89
SHROOM4Q9ULL8 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC33.12■■■□□ 2.89
SHROOM4Q9ULL8 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC33.12■■■□□ 2.89
SHROOM4Q9ULL8 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC33.12■■■□□ 2.89
SHROOM4Q9ULL8 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC33.12■■■□□ 2.89
SHROOM4Q9ULL8 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC33.12■■■□□ 2.89
SHROOM4Q9ULL8 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC33.12■■■□□ 2.89
SHROOM4Q9ULL8 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC33.11■■■□□ 2.89
SHROOM4Q9ULL8 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC33.11■■■□□ 2.89
SHROOM4Q9ULL8 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC33.11■■■□□ 2.89
SHROOM4Q9ULL8 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC33.11■■■□□ 2.89
SHROOM4Q9ULL8 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC33.11■■■□□ 2.89
SHROOM4Q9ULL8 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC33.11■■■□□ 2.89
SHROOM4Q9ULL8 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC33.11■■■□□ 2.89
SHROOM4Q9ULL8 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC33.11■■■□□ 2.89
SHROOM4Q9ULL8 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC33.11■■■□□ 2.89
SHROOM4Q9ULL8 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC33.11■■■□□ 2.89
SHROOM4Q9ULL8 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC33.11■■■□□ 2.89
SHROOM4Q9ULL8 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC33.11■■■□□ 2.89
SHROOM4Q9ULL8 AC004790.2-201ENST00000623588 572 ntBASIC33.11■■■□□ 2.89
SHROOM4Q9ULL8 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC33.11■■■□□ 2.89
SHROOM4Q9ULL8 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC33.1■■■□□ 2.89
SHROOM4Q9ULL8 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC33.1■■■□□ 2.89
SHROOM4Q9ULL8 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC33.1■■■□□ 2.89
SHROOM4Q9ULL8 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC33.1■■■□□ 2.89
SHROOM4Q9ULL8 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC33.1■■■□□ 2.89
SHROOM4Q9ULL8 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC33.1■■■□□ 2.89
SHROOM4Q9ULL8 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC33.1■■■□□ 2.89
SHROOM4Q9ULL8 AL020989.1-201ENST00000422979 469 ntBASIC33.1■■■□□ 2.89
SHROOM4Q9ULL8 AC103564.2-201ENST00000432853 1299 ntBASIC33.1■■■□□ 2.89
SHROOM4Q9ULL8 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC33.1■■■□□ 2.89
SHROOM4Q9ULL8 HFE2-206ENST00000634927 506 ntTSL 4 BASIC33.1■■■□□ 2.89
SHROOM4Q9ULL8 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC33.1■■■□□ 2.89
SHROOM4Q9ULL8 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC33.1■■■□□ 2.89
SHROOM4Q9ULL8 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC33.09■■■□□ 2.89
SHROOM4Q9ULL8 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC33.09■■■□□ 2.89
SHROOM4Q9ULL8 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC33.09■■■□□ 2.89
SHROOM4Q9ULL8 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC33.09■■■□□ 2.89
SHROOM4Q9ULL8 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC33.09■■■□□ 2.89
SHROOM4Q9ULL8 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC33.09■■■□□ 2.89
SHROOM4Q9ULL8 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC33.09■■■□□ 2.89
SHROOM4Q9ULL8 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC33.09■■■□□ 2.89
SHROOM4Q9ULL8 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC33.09■■■□□ 2.89
SHROOM4Q9ULL8 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC33.09■■■□□ 2.89
SHROOM4Q9ULL8 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC33.09■■■□□ 2.89
SHROOM4Q9ULL8 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC33.09■■■□□ 2.89
SHROOM4Q9ULL8 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC33.09■■■□□ 2.89
SHROOM4Q9ULL8 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC33.09■■■□□ 2.89
SHROOM4Q9ULL8 RNA5SP421-201ENST00000516864 134 ntBASIC33.09■■■□□ 2.89
SHROOM4Q9ULL8 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC33.09■■■□□ 2.89
SHROOM4Q9ULL8 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC33.09■■■□□ 2.89
SHROOM4Q9ULL8 DUT-210ENST00000559935 569 ntTSL 3 BASIC33.09■■■□□ 2.89
SHROOM4Q9ULL8 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC33.09■■■□□ 2.89
SHROOM4Q9ULL8 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC33.09■■■□□ 2.89
SHROOM4Q9ULL8 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC33.09■■■□□ 2.89
SHROOM4Q9ULL8 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC33.09■■■□□ 2.89
SHROOM4Q9ULL8 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC33.09■■■□□ 2.89
SHROOM4Q9ULL8 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC33.09■■■□□ 2.89
SHROOM4Q9ULL8 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC33.08■■■□□ 2.89
SHROOM4Q9ULL8 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC33.08■■■□□ 2.89
SHROOM4Q9ULL8 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC33.08■■■□□ 2.89
SHROOM4Q9ULL8 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC33.08■■■□□ 2.89
SHROOM4Q9ULL8 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC33.08■■■□□ 2.89
SHROOM4Q9ULL8 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC33.08■■■□□ 2.89
SHROOM4Q9ULL8 AC004449.1-201ENST00000564240 433 ntBASIC33.08■■■□□ 2.89
SHROOM4Q9ULL8 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC33.08■■■□□ 2.89
SHROOM4Q9ULL8 BCAR1-209ENST00000546196 1340 ntBASIC33.08■■■□□ 2.89
SHROOM4Q9ULL8 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC33.08■■■□□ 2.89
SHROOM4Q9ULL8 GID4-202ENST00000376345 1391 ntTSL 3 BASIC33.08■■■□□ 2.89
SHROOM4Q9ULL8 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC33.08■■■□□ 2.89
SHROOM4Q9ULL8 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC33.08■■■□□ 2.89
SHROOM4Q9ULL8 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC33.08■■■□□ 2.89
SHROOM4Q9ULL8 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC33.08■■■□□ 2.89
SHROOM4Q9ULL8 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC33.08■■■□□ 2.89
SHROOM4Q9ULL8 EFTUD1P1-204ENST00000560401 1798 ntBASIC33.08■■■□□ 2.89
SHROOM4Q9ULL8 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC33.08■■■□□ 2.89
SHROOM4Q9ULL8 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC33.07■■■□□ 2.89
SHROOM4Q9ULL8 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC33.07■■■□□ 2.88
SHROOM4Q9ULL8 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC33.07■■■□□ 2.88
SHROOM4Q9ULL8 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC33.07■■■□□ 2.88
SHROOM4Q9ULL8 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC33.07■■■□□ 2.88
SHROOM4Q9ULL8 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC33.07■■■□□ 2.88
SHROOM4Q9ULL8 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC33.07■■■□□ 2.88
SHROOM4Q9ULL8 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC33.07■■■□□ 2.88
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms