Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC002056.1-201ENST00000395613 760 ntBASIC17.18■□□□□ 0.34
VPS13AQ96RL7 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC17.18■□□□□ 0.34
VPS13AQ96RL7 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC17.18■□□□□ 0.34
VPS13AQ96RL7 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VPS13AQ96RL7 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.18■□□□□ 0.34
VPS13AQ96RL7 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
VPS13AQ96RL7 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS13AQ96RL7 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC17.18■□□□□ 0.34
VPS13AQ96RL7 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS13AQ96RL7 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VPS13AQ96RL7 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS13AQ96RL7 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
VPS13AQ96RL7 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC17.18■□□□□ 0.34
VPS13AQ96RL7 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC17.18■□□□□ 0.34
VPS13AQ96RL7 AC079140.1-201ENST00000508039 487 ntBASIC17.18■□□□□ 0.34
VPS13AQ96RL7 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC17.18■□□□□ 0.34
VPS13AQ96RL7 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
VPS13AQ96RL7 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC17.18■□□□□ 0.34
VPS13AQ96RL7 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS13AQ96RL7 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC17.18■□□□□ 0.34
VPS13AQ96RL7 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VPS13AQ96RL7 CD81-202ENST00000381036 880 ntTSL 3 BASIC17.18■□□□□ 0.34
VPS13AQ96RL7 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC17.18■□□□□ 0.34
VPS13AQ96RL7 DDX43P3-201ENST00000441064 443 ntBASIC17.18■□□□□ 0.34
VPS13AQ96RL7 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC17.18■□□□□ 0.34
VPS13AQ96RL7 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC17.18■□□□□ 0.34
VPS13AQ96RL7 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
VPS13AQ96RL7 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.18■□□□□ 0.34
VPS13AQ96RL7 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC17.18■□□□□ 0.34
VPS13AQ96RL7 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS13AQ96RL7 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VPS13AQ96RL7 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS13AQ96RL7 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
VPS13AQ96RL7 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VPS13AQ96RL7 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS13AQ96RL7 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS13AQ96RL7 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
VPS13AQ96RL7 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC17.17■□□□□ 0.34
VPS13AQ96RL7 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS13AQ96RL7 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VPS13AQ96RL7 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VPS13AQ96RL7 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC17.17■□□□□ 0.34
VPS13AQ96RL7 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC17.17■□□□□ 0.34
VPS13AQ96RL7 AC007064.4-201ENST00000637740 555 ntBASIC17.17■□□□□ 0.34
VPS13AQ96RL7 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VPS13AQ96RL7 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC17.17■□□□□ 0.34
VPS13AQ96RL7 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS13AQ96RL7 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS13AQ96RL7 PARP8-218ENST00000513738 596 ntTSL 4 BASIC17.17■□□□□ 0.34
VPS13AQ96RL7 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC17.17■□□□□ 0.34
VPS13AQ96RL7 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC17.17■□□□□ 0.34
VPS13AQ96RL7 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.17■□□□□ 0.34
VPS13AQ96RL7 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC17.17■□□□□ 0.34
VPS13AQ96RL7 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS13AQ96RL7 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS13AQ96RL7 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS13AQ96RL7 CXCL1P1-201ENST00000502804 216 ntBASIC17.16■□□□□ 0.34
VPS13AQ96RL7 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC17.16■□□□□ 0.34
VPS13AQ96RL7 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC17.16■□□□□ 0.34
VPS13AQ96RL7 AC132938.2-201ENST00000579188 680 ntBASIC17.16■□□□□ 0.34
VPS13AQ96RL7 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC17.16■□□□□ 0.34
VPS13AQ96RL7 AL591163.1-201ENST00000641757 987 ntBASIC17.16■□□□□ 0.34
VPS13AQ96RL7 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
VPS13AQ96RL7 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
VPS13AQ96RL7 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS13AQ96RL7 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC17.16■□□□□ 0.34
VPS13AQ96RL7 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VPS13AQ96RL7 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS13AQ96RL7 BCYRN1-201ENST00000418539 200 ntBASIC17.16■□□□□ 0.34
VPS13AQ96RL7 KRT17P7-201ENST00000451704 1104 ntBASIC17.16■□□□□ 0.34
VPS13AQ96RL7 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC17.16■□□□□ 0.34
VPS13AQ96RL7 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC17.16■□□□□ 0.34
VPS13AQ96RL7 BSG-214ENST00000614867 960 ntTSL 3 BASIC17.16■□□□□ 0.34
VPS13AQ96RL7 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.16■□□□□ 0.34
VPS13AQ96RL7 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VPS13AQ96RL7 AC100757.3-201ENST00000622361 1406 ntBASIC17.16■□□□□ 0.34
VPS13AQ96RL7 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS13AQ96RL7 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VPS13AQ96RL7 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC17.16■□□□□ 0.34
VPS13AQ96RL7 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS13AQ96RL7 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
VPS13AQ96RL7 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC17.15■□□□□ 0.34
VPS13AQ96RL7 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.15■□□□□ 0.34
VPS13AQ96RL7 AC138969.3-201ENST00000546612 1459 ntBASIC17.15■□□□□ 0.34
VPS13AQ96RL7 AC138932.2-201ENST00000548268 1459 ntBASIC17.15■□□□□ 0.34
VPS13AQ96RL7 AC126755.4-201ENST00000549796 1459 ntBASIC17.15■□□□□ 0.34
VPS13AQ96RL7 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC17.15■□□□□ 0.34
VPS13AQ96RL7 TSSK5P-201ENST00000423978 907 ntBASIC17.15■□□□□ 0.34
VPS13AQ96RL7 AC005237.2-201ENST00000434368 219 ntBASIC17.15■□□□□ 0.34
VPS13AQ96RL7 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VPS13AQ96RL7 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC17.15■□□□□ 0.34
VPS13AQ96RL7 FAM86C2P-203ENST00000528684 1004 ntBASIC17.15■□□□□ 0.34
VPS13AQ96RL7 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VPS13AQ96RL7 AC009118.2-201ENST00000613275 655 ntBASIC17.15■□□□□ 0.34
VPS13AQ96RL7 AL138828.2-201ENST00000615812 383 ntBASIC17.15■□□□□ 0.34
VPS13AQ96RL7 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
VPS13AQ96RL7 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS13AQ96RL7 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VPS13AQ96RL7 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
VPS13AQ96RL7 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms