Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 UROD-219ENST00000494399 1848 ntTSL 216.33■□□□□ 0.215e-7■■□□□ 11.4
UPF1Q92900 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.117e-10■■□□□ 11.4
UPF1Q92900 GET4-207ENST00000483469 370 ntTSL 225.92■■□□□ 1.744e-7■■□□□ 11.4
UPF1Q92900 GET4-203ENST00000412734 873 ntTSL 222.8■■□□□ 1.244e-7■■□□□ 11.4
UPF1Q92900 GET4-205ENST00000441491 682 ntTSL 521.94■■□□□ 1.14e-7■■□□□ 11.4
UPF1Q92900 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.074e-7■■□□□ 11.4
UPF1Q92900 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.974e-7■■□□□ 11.4
UPF1Q92900 AIG1-204ENST00000367601 727 ntTSL 520.26■□□□□ 0.838e-18■■□□□ 11.4
UPF1Q92900 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.734e-7■■□□□ 11.4
UPF1Q92900 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.494e-7■■□□□ 11.4
UPF1Q92900 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.444e-9■■□□□ 11.4
UPF1Q92900 AIG1-205ENST00000447498 444 ntTSL 517.75■□□□□ 0.438e-18■■□□□ 11.4
UPF1Q92900 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.344e-7■■□□□ 11.4
UPF1Q92900 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.314e-9■■□□□ 11.4
UPF1Q92900 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.214e-7■■□□□ 11.4
UPF1Q92900 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.074e-7■■□□□ 11.4
UPF1Q92900 ING4-201ENST00000341550 1709 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.214e-7■■□□□ 11.4
UPF1Q92900 ING4-218ENST00000619641 1280 ntTSL 1 (best) BASIC12.92□□□□□ -0.344e-7■■□□□ 11.4
UPF1Q92900 GET4-204ENST00000426056 502 ntTSL 412.77□□□□□ -0.374e-7■■□□□ 11.4
UPF1Q92900 AIG1-201ENST00000275235 1202 ntTSL 2 BASIC12.65□□□□□ -0.388e-18■■□□□ 11.4
UPF1Q92900 ORAI2-210ENST00000611770 10679 ntAPPRIS P1 TSL 2 BASIC11.15□□□□□ -0.634e-7■■□□□ 11.4
UPF1Q92900 ORAI2-201ENST00000356387 10811 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.684e-7■■□□□ 11.4
UPF1Q92900 AIG1-209ENST00000629020 3636 ntTSL 2 BASIC10.06□□□□□ -0.88e-18■■□□□ 11.4
UPF1Q92900 CTDSPL2-201ENST00000260327 6828 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.94e-7■■□□□ 11.4
UPF1Q92900 AIG1-206ENST00000458219 593 ntTSL 29.18□□□□□ -0.948e-18■■□□□ 11.4
UPF1Q92900 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC7.97□□□□□ -1.138e-18■■□□□ 11.4
UPF1Q92900 MIEF1-203ENST00000404569 3797 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.531e-7■■□□□ 11.4
UPF1Q92900 TNPO3-202ENST00000471166 3019 ntTSL 5 BASIC9.92□□□□□ -0.821e-7■■□□□ 11.4
UPF1Q92900 STK25-223ENST00000470438 515 ntTSL 527.72■■■□□ 2.031e-7■■□□□ 11.4
UPF1Q92900 STYX-203ENST00000556861 840 ntTSL 313.93□□□□□ -0.181e-7■■□□□ 11.4
UPF1Q92900 STYX-201ENST00000354586 4857 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.421e-7■■□□□ 11.4
UPF1Q92900 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.271e-7■■□□□ 11.4
UPF1Q92900 INCENP-205ENST00000531099 561 ntTSL 49.14□□□□□ -0.953e-7■■□□□ 11.4
UPF1Q92900 XPO6-213ENST00000568065 942 ntTSL 526.78■■□□□ 1.883e-6■□□□□ 11.3
UPF1Q92900 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.023e-6■□□□□ 11.3
UPF1Q92900 XPO6-208ENST00000565698 4255 ntTSL 2 BASIC12.22□□□□□ -0.453e-6■□□□□ 11.3
UPF1Q92900 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.233e-7■□□□□ 11.3
UPF1Q92900 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.862e-8■□□□□ 11.3
UPF1Q92900 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC20.28■□□□□ 0.842e-8■□□□□ 11.3
UPF1Q92900 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.3■□□□□ 0.682e-8■□□□□ 11.3
UPF1Q92900 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.15■□□□□ 0.662e-8■□□□□ 11.3
UPF1Q92900 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.99■□□□□ 0.632e-8■□□□□ 11.3
UPF1Q92900 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.01■□□□□ 0.472e-8■□□□□ 11.3
UPF1Q92900 SGO1-206ENST00000421451 1969 ntTSL 1 (best) BASIC15□□□□□ -0.012e-8■□□□□ 11.3
UPF1Q92900 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.082e-8■□□□□ 11.3
UPF1Q92900 SGO1-207ENST00000425061 1213 ntTSL 1 (best) BASIC13.56□□□□□ -0.242e-8■□□□□ 11.3
UPF1Q92900 SGO1-210ENST00000443724 931 ntTSL 1 (best) BASIC13.56□□□□□ -0.242e-8■□□□□ 11.3
UPF1Q92900 SGO1-211ENST00000452020 1162 ntTSL 1 (best) BASIC13.56□□□□□ -0.242e-8■□□□□ 11.3
UPF1Q92900 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC8.68□□□□□ -1.022e-8■□□□□ 11.3
UPF1Q92900 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC7.42□□□□□ -1.222e-8■□□□□ 11.3
UPF1Q92900 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.523e-6■□□□□ 11.3
UPF1Q92900 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.373e-6■□□□□ 11.3
UPF1Q92900 SLCO4A1-208ENST00000497209 3092 ntTSL 1 (best)14.14□□□□□ -0.153e-6■□□□□ 11.3
UPF1Q92900 ELOVL5-201ENST00000304434 2827 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.655e-7■□□□□ 11.3
UPF1Q92900 ELOVL5-207ENST00000542638 2875 ntTSL 1 (best) BASIC10.97□□□□□ -0.655e-7■□□□□ 11.3
UPF1Q92900 ELOVL5-203ENST00000370918 3081 ntTSL 2 BASIC7.53□□□□□ -1.25e-7■□□□□ 11.3
UPF1Q92900 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.329e-7■□□□□ 11.3
UPF1Q92900 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.089e-7■□□□□ 11.3
UPF1Q92900 MTFR1L-210ENST00000474295 1873 ntTSL 1 (best) BASIC16.7■□□□□ 0.269e-7■□□□□ 11.3
UPF1Q92900 MTFR1L-201ENST00000374300 2053 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.379e-7■□□□□ 11.3
UPF1Q92900 MTFR1L-204ENST00000374307 1868 ntTSL 2 BASIC12.61□□□□□ -0.399e-7■□□□□ 11.3
UPF1Q92900 MTFR1L-214ENST00000497956 2531 ntTSL 210.23□□□□□ -0.779e-7■□□□□ 11.3
UPF1Q92900 MTFR1L-207ENST00000466284 3262 ntTSL 2 BASIC7.63□□□□□ -1.199e-7■□□□□ 11.3
UPF1Q92900 SEPT9-245ENST00000592481 1291 ntTSL 526.36■■□□□ 1.815e-7■□□□□ 11.3
UPF1Q92900 AMDHD2-215ENST00000568263 1482 ntTSL 225.89■■□□□ 1.733e-6■□□□□ 11.3
UPF1Q92900 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC22.01■■□□□ 1.113e-6■□□□□ 11.3
UPF1Q92900 ACVR2B-203ENST00000465020 1666 ntTSL 221.94■■□□□ 1.11e-10■□□□□ 11.3
UPF1Q92900 SEPT9-221ENST00000588958 879 ntTSL 221.9■■□□□ 1.15e-7■□□□□ 11.3
UPF1Q92900 SEPT9-239ENST00000591704 749 ntTSL 217.07■□□□□ 0.325e-7■□□□□ 11.3
UPF1Q92900 SEPT9-247ENST00000593189 817 ntTSL 516.88■□□□□ 0.295e-7■□□□□ 11.3
UPF1Q92900 SEPT9-225ENST00000589250 527 ntTSL 213.07□□□□□ -0.325e-7■□□□□ 11.3
UPF1Q92900 ACVR2B-201ENST00000352511 11821 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.711e-10■□□□□ 11.3
UPF1Q92900 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC36.47■■■■□ 3.431e-7■□□□□ 11.3
UPF1Q92900 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC26.58■■□□□ 1.851e-7■□□□□ 11.3
UPF1Q92900 HNRNPUL1-210ENST00000595806 1659 ntTSL 225.1■■□□□ 1.611e-7■□□□□ 11.3
UPF1Q92900 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.191e-7■□□□□ 11.3
UPF1Q92900 HNRNPUL1-208ENST00000595196 3043 ntTSL 1 (best)17.3■□□□□ 0.361e-7■□□□□ 11.3
UPF1Q92900 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.341e-7■□□□□ 11.3
UPF1Q92900 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.03■□□□□ 0.321e-7■□□□□ 11.3
UPF1Q92900 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC15.96■□□□□ 0.151e-7■□□□□ 11.3
UPF1Q92900 HNRNPUL1-213ENST00000599614 2447 ntTSL 514.64□□□□□ -0.071e-7■□□□□ 11.3
UPF1Q92900 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.181e-7■□□□□ 11.3
UPF1Q92900 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC13.7□□□□□ -0.221e-7■□□□□ 11.3
UPF1Q92900 HNRNPUL1-207ENST00000595018 2794 ntTSL 2 BASIC13.03□□□□□ -0.321e-7■□□□□ 11.3
UPF1Q92900 DPYSL2-206ENST00000523027 2130 ntTSL 2 BASIC12.43□□□□□ -0.421e-7■□□□□ 11.3
UPF1Q92900 HNRNPUL1-202ENST00000352456 3426 ntTSL 1 (best) BASIC11.93□□□□□ -0.51e-7■□□□□ 11.3
UPF1Q92900 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC29.56■■■□□ 2.325e-10■□□□□ 11.3
UPF1Q92900 VKORC1-207ENST00000472468 461 ntTSL 227.27■■□□□ 1.965e-10■□□□□ 11.3
UPF1Q92900 VKORC1-208ENST00000498155 870 ntTSL 5 BASIC14.29□□□□□ -0.125e-10■□□□□ 11.3
UPF1Q92900 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC25.08■■□□□ 1.615e-8■□□□□ 11.3
UPF1Q92900 SLC38A10-210ENST00000573058 1627 nt30.3■■■□□ 2.442e-6■□□□□ 11.3
UPF1Q92900 SLC38A10-206ENST00000540966 896 ntTSL 324.69■■□□□ 1.542e-6■□□□□ 11.3
UPF1Q92900 SLC38A10-211ENST00000576151 774 ntTSL 223.45■■□□□ 1.342e-6■□□□□ 11.3
UPF1Q92900 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.822e-6■□□□□ 11.3
UPF1Q92900 SLC38A10-207ENST00000542075 2903 ntTSL 216.09■□□□□ 0.172e-6■□□□□ 11.3
UPF1Q92900 CCNI-204ENST00000506614 525 ntTSL 29.6□□□□□ -0.877e-10■□□□□ 11.3
UPF1Q92900 CCNI-208ENST00000515468 636 ntTSL 36.65□□□□□ -1.347e-10■□□□□ 11.3
UPF1Q92900 ARL4A-202ENST00000396662 1296 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.368e-9■□□□□ 11.3
UPF1Q92900 ARL4A-201ENST00000356797 1147 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.598e-9■□□□□ 11.3
UPF1Q92900 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.078e-9■□□□□ 11.3
Retrieved 100 of 15,879 protein–RNA pairs in 70.1 ms