Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC17.59■□□□□ 0.41
HDDC3Q8N4P3 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HDDC3Q8N4P3 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HDDC3Q8N4P3 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HDDC3Q8N4P3 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.59■□□□□ 0.41
HDDC3Q8N4P3 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
HDDC3Q8N4P3 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC17.59■□□□□ 0.41
HDDC3Q8N4P3 KRT18P55-202ENST00000578578 1546 ntBASIC17.59■□□□□ 0.41
HDDC3Q8N4P3 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.59■□□□□ 0.41
HDDC3Q8N4P3 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HDDC3Q8N4P3 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HDDC3Q8N4P3 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HDDC3Q8N4P3 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC17.59■□□□□ 0.41
HDDC3Q8N4P3 AC073621.1-201ENST00000392730 636 ntBASIC17.59■□□□□ 0.41
HDDC3Q8N4P3 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
HDDC3Q8N4P3 AC023274.1-201ENST00000418278 595 ntBASIC17.59■□□□□ 0.41
HDDC3Q8N4P3 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
HDDC3Q8N4P3 AC136632.2-201ENST00000512891 861 ntBASIC17.59■□□□□ 0.41
HDDC3Q8N4P3 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC17.59■□□□□ 0.41
HDDC3Q8N4P3 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
HDDC3Q8N4P3 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC17.59■□□□□ 0.41
HDDC3Q8N4P3 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HDDC3Q8N4P3 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HDDC3Q8N4P3 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
HDDC3Q8N4P3 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HDDC3Q8N4P3 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
HDDC3Q8N4P3 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
HDDC3Q8N4P3 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.58■□□□□ 0.41
HDDC3Q8N4P3 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
HDDC3Q8N4P3 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.41
HDDC3Q8N4P3 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
HDDC3Q8N4P3 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
HDDC3Q8N4P3 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
HDDC3Q8N4P3 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HDDC3Q8N4P3 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC17.58■□□□□ 0.41
HDDC3Q8N4P3 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
HDDC3Q8N4P3 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HDDC3Q8N4P3 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
HDDC3Q8N4P3 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HDDC3Q8N4P3 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HDDC3Q8N4P3 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC17.58■□□□□ 0.4
HDDC3Q8N4P3 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
HDDC3Q8N4P3 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC17.58■□□□□ 0.4
HDDC3Q8N4P3 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.58■□□□□ 0.4
HDDC3Q8N4P3 AC009947.1-201ENST00000444350 727 ntBASIC17.58■□□□□ 0.4
HDDC3Q8N4P3 S100A2-206ENST00000497140 697 ntTSL 2 BASIC17.58■□□□□ 0.4
HDDC3Q8N4P3 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HDDC3Q8N4P3 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC17.58■□□□□ 0.4
HDDC3Q8N4P3 ETFA-208ENST00000559602 792 ntTSL 3 BASIC17.58■□□□□ 0.4
HDDC3Q8N4P3 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.58■□□□□ 0.4
HDDC3Q8N4P3 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC17.58■□□□□ 0.4
HDDC3Q8N4P3 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC17.58■□□□□ 0.4
HDDC3Q8N4P3 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC17.58■□□□□ 0.4
HDDC3Q8N4P3 STK25P1-201ENST00000585406 838 ntBASIC17.58■□□□□ 0.4
HDDC3Q8N4P3 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.58■□□□□ 0.4
HDDC3Q8N4P3 AC004706.3-202ENST00000621574 984 ntBASIC17.58■□□□□ 0.4
HDDC3Q8N4P3 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC17.58■□□□□ 0.4
HDDC3Q8N4P3 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC17.58■□□□□ 0.4
HDDC3Q8N4P3 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.58■□□□□ 0.4
HDDC3Q8N4P3 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HDDC3Q8N4P3 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HDDC3Q8N4P3 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HDDC3Q8N4P3 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HDDC3Q8N4P3 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HDDC3Q8N4P3 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.58■□□□□ 0.4
HDDC3Q8N4P3 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
HDDC3Q8N4P3 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC17.57■□□□□ 0.4
HDDC3Q8N4P3 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC17.57■□□□□ 0.4
HDDC3Q8N4P3 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDDC3Q8N4P3 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
HDDC3Q8N4P3 NCF1C-201ENST00000438382 1427 ntBASIC17.57■□□□□ 0.4
HDDC3Q8N4P3 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDDC3Q8N4P3 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
HDDC3Q8N4P3 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC17.57■□□□□ 0.4
HDDC3Q8N4P3 KRT18P28-201ENST00000453838 1332 ntBASIC17.57■□□□□ 0.4
HDDC3Q8N4P3 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
HDDC3Q8N4P3 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDDC3Q8N4P3 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
HDDC3Q8N4P3 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.57■□□□□ 0.4
HDDC3Q8N4P3 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDDC3Q8N4P3 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HDDC3Q8N4P3 SLC4A1APP2-201ENST00000424054 1259 ntBASIC17.57■□□□□ 0.4
HDDC3Q8N4P3 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
HDDC3Q8N4P3 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC17.57■□□□□ 0.4
HDDC3Q8N4P3 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
HDDC3Q8N4P3 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC17.57■□□□□ 0.4
HDDC3Q8N4P3 AL596442.2-201ENST00000610240 980 ntBASIC17.57■□□□□ 0.4
HDDC3Q8N4P3 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC17.57■□□□□ 0.4
HDDC3Q8N4P3 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC17.57■□□□□ 0.4
HDDC3Q8N4P3 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDDC3Q8N4P3 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.57■□□□□ 0.4
HDDC3Q8N4P3 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDDC3Q8N4P3 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDDC3Q8N4P3 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDDC3Q8N4P3 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDDC3Q8N4P3 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HDDC3Q8N4P3 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.57■□□□□ 0.4
HDDC3Q8N4P3 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDDC3Q8N4P3 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.56■□□□□ 0.4
HDDC3Q8N4P3 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms