Protein–RNA interactions for Protein: Q5XG99

LYSMD4, LysM and putative peptidoglycan-binding domain-containing protein 4, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD4Q5XG99 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC17.12■□□□□ 0.33
LYSMD4Q5XG99 TIMM8BP1-201ENST00000452384 211 ntBASIC17.12■□□□□ 0.33
LYSMD4Q5XG99 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC17.12■□□□□ 0.33
LYSMD4Q5XG99 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
LYSMD4Q5XG99 GATB-205ENST00000508611 605 ntTSL 2 BASIC17.12■□□□□ 0.33
LYSMD4Q5XG99 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC17.12■□□□□ 0.33
LYSMD4Q5XG99 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC17.12■□□□□ 0.33
LYSMD4Q5XG99 IGHV3OR16-6-201ENST00000568775 360 ntBASIC17.12■□□□□ 0.33
LYSMD4Q5XG99 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LYSMD4Q5XG99 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC17.12■□□□□ 0.33
LYSMD4Q5XG99 AC005498.2-205ENST00000593218 784 ntBASIC17.12■□□□□ 0.33
LYSMD4Q5XG99 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.12■□□□□ 0.33
LYSMD4Q5XG99 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LYSMD4Q5XG99 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LYSMD4Q5XG99 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC17.12■□□□□ 0.33
LYSMD4Q5XG99 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LYSMD4Q5XG99 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
LYSMD4Q5XG99 AC093677.2-201ENST00000600169 1863 ntBASIC17.12■□□□□ 0.33
LYSMD4Q5XG99 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LYSMD4Q5XG99 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
LYSMD4Q5XG99 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LYSMD4Q5XG99 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LYSMD4Q5XG99 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC17.11■□□□□ 0.33
LYSMD4Q5XG99 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
LYSMD4Q5XG99 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LYSMD4Q5XG99 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
LYSMD4Q5XG99 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LYSMD4Q5XG99 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.11■□□□□ 0.33
LYSMD4Q5XG99 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LYSMD4Q5XG99 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
LYSMD4Q5XG99 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LYSMD4Q5XG99 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LYSMD4Q5XG99 HNRNPFP1-201ENST00000391730 1133 ntBASIC17.11■□□□□ 0.33
LYSMD4Q5XG99 AC002056.1-201ENST00000395613 760 ntBASIC17.11■□□□□ 0.33
LYSMD4Q5XG99 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LYSMD4Q5XG99 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC17.11■□□□□ 0.33
LYSMD4Q5XG99 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC17.11■□□□□ 0.33
LYSMD4Q5XG99 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC17.11■□□□□ 0.33
LYSMD4Q5XG99 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LYSMD4Q5XG99 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LYSMD4Q5XG99 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC17.11■□□□□ 0.33
LYSMD4Q5XG99 MIR4745-201ENST00000577608 62 ntBASIC17.11■□□□□ 0.33
LYSMD4Q5XG99 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC17.11■□□□□ 0.33
LYSMD4Q5XG99 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC17.11■□□□□ 0.33
LYSMD4Q5XG99 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC17.11■□□□□ 0.33
LYSMD4Q5XG99 ACTL9-202ENST00000612068 1252 ntBASIC17.11■□□□□ 0.33
LYSMD4Q5XG99 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LYSMD4Q5XG99 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC17.11■□□□□ 0.33
LYSMD4Q5XG99 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.11■□□□□ 0.33
LYSMD4Q5XG99 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LYSMD4Q5XG99 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LYSMD4Q5XG99 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LYSMD4Q5XG99 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LYSMD4Q5XG99 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LYSMD4Q5XG99 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LYSMD4Q5XG99 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LYSMD4Q5XG99 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LYSMD4Q5XG99 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LYSMD4Q5XG99 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LYSMD4Q5XG99 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
LYSMD4Q5XG99 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LYSMD4Q5XG99 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
LYSMD4Q5XG99 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LYSMD4Q5XG99 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LYSMD4Q5XG99 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
LYSMD4Q5XG99 FALEC-201ENST00000416894 566 ntTSL 3 BASIC17.1■□□□□ 0.33
LYSMD4Q5XG99 AC244107.1-201ENST00000442033 332 ntBASIC17.1■□□□□ 0.33
LYSMD4Q5XG99 AC067863.1-201ENST00000494933 530 ntBASIC17.1■□□□□ 0.33
LYSMD4Q5XG99 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC17.1■□□□□ 0.33
LYSMD4Q5XG99 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.1■□□□□ 0.33
LYSMD4Q5XG99 DUT-210ENST00000559935 569 ntTSL 3 BASIC17.1■□□□□ 0.33
LYSMD4Q5XG99 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
LYSMD4Q5XG99 BSG-214ENST00000614867 960 ntTSL 3 BASIC17.1■□□□□ 0.33
LYSMD4Q5XG99 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.1■□□□□ 0.33
LYSMD4Q5XG99 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LYSMD4Q5XG99 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
LYSMD4Q5XG99 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LYSMD4Q5XG99 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
LYSMD4Q5XG99 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LYSMD4Q5XG99 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LYSMD4Q5XG99 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LYSMD4Q5XG99 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LYSMD4Q5XG99 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.1■□□□□ 0.33
LYSMD4Q5XG99 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.1■□□□□ 0.33
LYSMD4Q5XG99 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.1■□□□□ 0.33
LYSMD4Q5XG99 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
LYSMD4Q5XG99 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.09■□□□□ 0.33
LYSMD4Q5XG99 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
LYSMD4Q5XG99 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LYSMD4Q5XG99 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
LYSMD4Q5XG99 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC17.09■□□□□ 0.33
LYSMD4Q5XG99 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LYSMD4Q5XG99 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LYSMD4Q5XG99 AL627223.1-201ENST00000416693 442 ntBASIC17.09■□□□□ 0.33
LYSMD4Q5XG99 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.09■□□□□ 0.33
LYSMD4Q5XG99 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.09■□□□□ 0.33
LYSMD4Q5XG99 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LYSMD4Q5XG99 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC17.09■□□□□ 0.33
LYSMD4Q5XG99 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC17.09■□□□□ 0.33
LYSMD4Q5XG99 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms