Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 AL121761.2-201ENST00000598007 1648 ntBASIC16.64■□□□□ 0.25
RAE1P78406 AC046185.3-201ENST00000623228 1824 ntBASIC16.64■□□□□ 0.25
RAE1P78406 AC060834.1-201ENST00000443027 2032 ntBASIC16.64■□□□□ 0.25
RAE1P78406 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
RAE1P78406 CCS-201ENST00000310190 942 ntTSL 5 BASIC16.64■□□□□ 0.25
RAE1P78406 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RAE1P78406 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
RAE1P78406 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC16.64■□□□□ 0.25
RAE1P78406 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.64■□□□□ 0.25
RAE1P78406 STK25P1-201ENST00000585406 838 ntBASIC16.64■□□□□ 0.25
RAE1P78406 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.64■□□□□ 0.25
RAE1P78406 AP002414.4-201ENST00000589764 1148 ntBASIC16.64■□□□□ 0.25
RAE1P78406 AC011467.2-201ENST00000598425 242 ntBASIC16.64■□□□□ 0.25
RAE1P78406 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC16.64■□□□□ 0.25
RAE1P78406 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RAE1P78406 AL353593.2-201ENST00000602529 1483 ntBASIC16.64■□□□□ 0.25
RAE1P78406 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
RAE1P78406 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RAE1P78406 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RAE1P78406 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
RAE1P78406 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
RAE1P78406 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RAE1P78406 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RAE1P78406 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RAE1P78406 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
RAE1P78406 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RAE1P78406 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
RAE1P78406 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC16.64■□□□□ 0.25
RAE1P78406 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RAE1P78406 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RAE1P78406 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RAE1P78406 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
RAE1P78406 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC16.64■□□□□ 0.25
RAE1P78406 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
RAE1P78406 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RAE1P78406 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RAE1P78406 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
RAE1P78406 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RAE1P78406 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
RAE1P78406 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
RAE1P78406 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RAE1P78406 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RAE1P78406 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RAE1P78406 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RAE1P78406 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RAE1P78406 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC16.63■□□□□ 0.25
RAE1P78406 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RAE1P78406 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RAE1P78406 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
RAE1P78406 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC16.63■□□□□ 0.25
RAE1P78406 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
RAE1P78406 VENTXP7-201ENST00000475503 772 ntBASIC16.63■□□□□ 0.25
RAE1P78406 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC16.63■□□□□ 0.25
RAE1P78406 CIB2-208ENST00000560618 804 ntTSL 2 BASIC16.63■□□□□ 0.25
RAE1P78406 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
RAE1P78406 MIR3180-1-201ENST00000580374 94 ntBASIC16.63■□□□□ 0.25
RAE1P78406 MIR3180-3-201ENST00000584616 94 ntBASIC16.63■□□□□ 0.25
RAE1P78406 DBP-204ENST00000599385 709 ntTSL 3 BASIC16.63■□□□□ 0.25
RAE1P78406 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
RAE1P78406 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
RAE1P78406 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
RAE1P78406 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
RAE1P78406 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RAE1P78406 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RAE1P78406 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC16.63■□□□□ 0.25
RAE1P78406 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RAE1P78406 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
RAE1P78406 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RAE1P78406 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.63■□□□□ 0.25
RAE1P78406 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
RAE1P78406 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RAE1P78406 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RAE1P78406 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC16.62■□□□□ 0.25
RAE1P78406 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RAE1P78406 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RAE1P78406 TP73-AS1-210ENST00000637775 1455 ntBASIC16.62■□□□□ 0.25
RAE1P78406 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.62■□□□□ 0.25
RAE1P78406 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
RAE1P78406 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
RAE1P78406 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
RAE1P78406 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RAE1P78406 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RAE1P78406 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RAE1P78406 TOB2P1-201ENST00000469761 992 ntBASIC16.62■□□□□ 0.25
RAE1P78406 CDV3-207ENST00000508481 661 ntTSL 3 BASIC16.62■□□□□ 0.25
RAE1P78406 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC16.62■□□□□ 0.25
RAE1P78406 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC16.62■□□□□ 0.25
RAE1P78406 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC16.62■□□□□ 0.25
RAE1P78406 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC16.62■□□□□ 0.25
RAE1P78406 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC16.62■□□□□ 0.25
RAE1P78406 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RAE1P78406 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
RAE1P78406 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RAE1P78406 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RAE1P78406 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
RAE1P78406 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RAE1P78406 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
RAE1P78406 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
RAE1P78406 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RAE1P78406 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms