Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CKS1BP61024 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CKS1BP61024 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CKS1BP61024 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CKS1BP61024 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC12.36□□□□□ -0.43
CKS1BP61024 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CKS1BP61024 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CKS1BP61024 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC12.36□□□□□ -0.43
CKS1BP61024 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CKS1BP61024 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CKS1BP61024 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CKS1BP61024 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CKS1BP61024 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CKS1BP61024 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CKS1BP61024 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC12.36□□□□□ -0.43
CKS1BP61024 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC12.36□□□□□ -0.43
CKS1BP61024 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
CKS1BP61024 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC12.35□□□□□ -0.43
CKS1BP61024 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
CKS1BP61024 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CKS1BP61024 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC12.35□□□□□ -0.43
CKS1BP61024 MYLKP1-201ENST00000509077 1580 ntBASIC12.35□□□□□ -0.43
CKS1BP61024 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CKS1BP61024 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
CKS1BP61024 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CKS1BP61024 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC12.35□□□□□ -0.43
CKS1BP61024 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CKS1BP61024 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CKS1BP61024 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC12.35□□□□□ -0.43
CKS1BP61024 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CKS1BP61024 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC12.35□□□□□ -0.43
CKS1BP61024 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC12.35□□□□□ -0.43
CKS1BP61024 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CKS1BP61024 POU5F1P3-201ENST00000428824 1078 ntBASIC12.35□□□□□ -0.43
CKS1BP61024 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC12.35□□□□□ -0.43
CKS1BP61024 PTPA-216ENST00000432651 857 ntTSL 2 BASIC12.35□□□□□ -0.43
CKS1BP61024 SLC25A6P5-201ENST00000435663 894 ntBASIC12.35□□□□□ -0.43
CKS1BP61024 MAP2K4P1-201ENST00000438453 1195 ntBASIC12.35□□□□□ -0.43
CKS1BP61024 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC12.35□□□□□ -0.43
CKS1BP61024 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC12.35□□□□□ -0.43
CKS1BP61024 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CKS1BP61024 Z85996.1-201ENST00000494644 937 ntBASIC12.35□□□□□ -0.43
CKS1BP61024 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
CKS1BP61024 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC12.35□□□□□ -0.43
CKS1BP61024 UNC93B5-201ENST00000530315 699 ntBASIC12.35□□□□□ -0.43
CKS1BP61024 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC12.35□□□□□ -0.43
CKS1BP61024 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
CKS1BP61024 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CKS1BP61024 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC12.35□□□□□ -0.43
CKS1BP61024 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC12.35□□□□□ -0.43
CKS1BP61024 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CKS1BP61024 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
CKS1BP61024 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CKS1BP61024 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
CKS1BP61024 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CKS1BP61024 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CKS1BP61024 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
CKS1BP61024 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC12.35□□□□□ -0.43
CKS1BP61024 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC12.35□□□□□ -0.43
CKS1BP61024 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CKS1BP61024 REXO1L9P-201ENST00000604264 2108 ntBASIC12.35□□□□□ -0.43
CKS1BP61024 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CKS1BP61024 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CKS1BP61024 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CKS1BP61024 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CKS1BP61024 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
CKS1BP61024 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CKS1BP61024 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CKS1BP61024 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC12.35□□□□□ -0.43
CKS1BP61024 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CKS1BP61024 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
CKS1BP61024 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CKS1BP61024 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CKS1BP61024 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CKS1BP61024 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC12.35□□□□□ -0.43
CKS1BP61024 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC12.35□□□□□ -0.43
CKS1BP61024 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CKS1BP61024 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
CKS1BP61024 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
CKS1BP61024 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CKS1BP61024 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC12.34□□□□□ -0.43
CKS1BP61024 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CKS1BP61024 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CKS1BP61024 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CKS1BP61024 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CKS1BP61024 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CKS1BP61024 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
CKS1BP61024 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC12.34□□□□□ -0.43
CKS1BP61024 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CKS1BP61024 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
CKS1BP61024 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CKS1BP61024 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
CKS1BP61024 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
CKS1BP61024 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC12.34□□□□□ -0.43
CKS1BP61024 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
CKS1BP61024 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC12.34□□□□□ -0.43
CKS1BP61024 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC12.34□□□□□ -0.43
CKS1BP61024 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
CKS1BP61024 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
CKS1BP61024 RCC2P3-201ENST00000418112 1537 ntBASIC12.34□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms