Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CDH11P55287 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH11P55287 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
CDH11P55287 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.12■□□□□ 0.17
CDH11P55287 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC16.12■□□□□ 0.17
CDH11P55287 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC16.12■□□□□ 0.17
CDH11P55287 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
CDH11P55287 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
CDH11P55287 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH11P55287 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
CDH11P55287 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH11P55287 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC16.12■□□□□ 0.17
CDH11P55287 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC16.12■□□□□ 0.17
CDH11P55287 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CDH11P55287 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
CDH11P55287 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH11P55287 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC16.12■□□□□ 0.17
CDH11P55287 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
CDH11P55287 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH11P55287 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CDH11P55287 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC16.12■□□□□ 0.17
CDH11P55287 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC16.12■□□□□ 0.17
CDH11P55287 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC16.12■□□□□ 0.17
CDH11P55287 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC16.12■□□□□ 0.17
CDH11P55287 NMU-205ENST00000511469 756 ntTSL 3 BASIC16.12■□□□□ 0.17
CDH11P55287 AL136038.3-201ENST00000561909 1096 ntBASIC16.12■□□□□ 0.17
CDH11P55287 DFFB-212ENST00000625756 649 ntTSL 5 BASIC16.12■□□□□ 0.17
CDH11P55287 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC16.12■□□□□ 0.17
CDH11P55287 CLN6-214ENST00000636314 442 ntTSL 3 BASIC16.12■□□□□ 0.17
CDH11P55287 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CDH11P55287 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH11P55287 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH11P55287 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
CDH11P55287 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC16.12■□□□□ 0.17
CDH11P55287 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH11P55287 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
CDH11P55287 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CDH11P55287 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH11P55287 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH11P55287 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC16.12■□□□□ 0.17
CDH11P55287 HLA-J-201ENST00000462773 1622 ntBASIC16.12■□□□□ 0.17
CDH11P55287 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CDH11P55287 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH11P55287 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.11■□□□□ 0.17
CDH11P55287 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH11P55287 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC16.11■□□□□ 0.17
CDH11P55287 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH11P55287 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH11P55287 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
CDH11P55287 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC16.11■□□□□ 0.17
CDH11P55287 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH11P55287 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH11P55287 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH11P55287 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH11P55287 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC16.11■□□□□ 0.17
CDH11P55287 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CDH11P55287 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC16.11■□□□□ 0.17
CDH11P55287 LY6E-213ENST00000522528 606 ntTSL 3 BASIC16.11■□□□□ 0.17
CDH11P55287 USF2-205ENST00000594064 1179 ntTSL 2 BASIC16.11■□□□□ 0.17
CDH11P55287 AC069148.1-201ENST00000608741 768 ntBASIC16.11■□□□□ 0.17
CDH11P55287 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CDH11P55287 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH11P55287 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CDH11P55287 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH11P55287 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC16.11■□□□□ 0.17
CDH11P55287 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH11P55287 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH11P55287 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH11P55287 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.11■□□□□ 0.17
CDH11P55287 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.11■□□□□ 0.17
CDH11P55287 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH11P55287 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH11P55287 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH11P55287 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH11P55287 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH11P55287 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC16.11■□□□□ 0.17
CDH11P55287 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH11P55287 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC16.1■□□□□ 0.17
CDH11P55287 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH11P55287 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH11P55287 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CDH11P55287 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
CDH11P55287 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC16.1■□□□□ 0.17
CDH11P55287 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH11P55287 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH11P55287 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CDH11P55287 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH11P55287 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CDH11P55287 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH11P55287 TNRC18P3-201ENST00000441896 2691 ntBASIC16.1■□□□□ 0.17
CDH11P55287 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH11P55287 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH11P55287 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH11P55287 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CDH11P55287 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC16.1■□□□□ 0.17
CDH11P55287 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC16.1■□□□□ 0.17
CDH11P55287 HYMAI.1-201ENST00000620949 238 ntBASIC16.1■□□□□ 0.17
CDH11P55287 AC116407.4-201ENST00000623319 1061 ntBASIC16.1■□□□□ 0.17
CDH11P55287 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
CDH11P55287 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms