Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC21.66■■□□□ 1.06
NUP98P52948 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC21.66■■□□□ 1.06
NUP98P52948 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC21.66■■□□□ 1.06
NUP98P52948 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC21.66■■□□□ 1.06
NUP98P52948 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC21.66■■□□□ 1.06
NUP98P52948 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC21.66■■□□□ 1.06
NUP98P52948 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
NUP98P52948 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC21.66■■□□□ 1.06
NUP98P52948 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC21.66■■□□□ 1.06
NUP98P52948 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NUP98P52948 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
NUP98P52948 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
NUP98P52948 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC21.66■■□□□ 1.06
NUP98P52948 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
NUP98P52948 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC21.66■■□□□ 1.06
NUP98P52948 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NUP98P52948 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
NUP98P52948 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NUP98P52948 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
NUP98P52948 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
NUP98P52948 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC21.65■■□□□ 1.06
NUP98P52948 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
NUP98P52948 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NUP98P52948 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
NUP98P52948 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC21.65■■□□□ 1.06
NUP98P52948 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
NUP98P52948 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
NUP98P52948 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC21.65■■□□□ 1.06
NUP98P52948 MMP17-203ENST00000535004 719 ntTSL 3 BASIC21.65■■□□□ 1.06
NUP98P52948 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC21.65■■□□□ 1.06
NUP98P52948 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC21.65■■□□□ 1.06
NUP98P52948 AC087289.5-201ENST00000586076 3175 ntBASIC21.65■■□□□ 1.06
NUP98P52948 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
NUP98P52948 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC21.65■■□□□ 1.06
NUP98P52948 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NUP98P52948 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
NUP98P52948 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
NUP98P52948 AL354751.1-201ENST00000412768 1863 ntBASIC21.64■■□□□ 1.06
NUP98P52948 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC21.64■■□□□ 1.06
NUP98P52948 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
NUP98P52948 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
NUP98P52948 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
NUP98P52948 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
NUP98P52948 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC21.64■■□□□ 1.06
NUP98P52948 KRT18P32-201ENST00000424695 1287 ntBASIC21.64■■□□□ 1.06
NUP98P52948 SPDYE11-202ENST00000450699 704 ntBASIC21.64■■□□□ 1.06
NUP98P52948 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.06
NUP98P52948 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC21.64■■□□□ 1.06
NUP98P52948 SPDYE9P-201ENST00000570642 692 ntBASIC21.64■■□□□ 1.06
NUP98P52948 SPDYE10P-202ENST00000612005 668 ntBASIC21.64■■□□□ 1.06
NUP98P52948 SPDYE8P-202ENST00000612377 668 ntBASIC21.64■■□□□ 1.06
NUP98P52948 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
NUP98P52948 NME9-203ENST00000383180 2133 ntTSL 2 BASIC21.64■■□□□ 1.06
NUP98P52948 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC21.64■■□□□ 1.05
NUP98P52948 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.64■■□□□ 1.05
NUP98P52948 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC21.64■■□□□ 1.05
NUP98P52948 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
NUP98P52948 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC21.64■■□□□ 1.05
NUP98P52948 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC21.64■■□□□ 1.05
NUP98P52948 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC21.64■■□□□ 1.05
NUP98P52948 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC21.64■■□□□ 1.05
NUP98P52948 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
NUP98P52948 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
NUP98P52948 AL135744.1-201ENST00000565098 629 ntBASIC21.64■■□□□ 1.05
NUP98P52948 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
NUP98P52948 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
NUP98P52948 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC21.64■■□□□ 1.05
NUP98P52948 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NUP98P52948 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC21.63■■□□□ 1.05
NUP98P52948 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NUP98P52948 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NUP98P52948 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NUP98P52948 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.63■■□□□ 1.05
NUP98P52948 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NUP98P52948 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC21.63■■□□□ 1.05
NUP98P52948 AL627223.1-201ENST00000416693 442 ntBASIC21.63■■□□□ 1.05
NUP98P52948 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC21.63■■□□□ 1.05
NUP98P52948 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC21.63■■□□□ 1.05
NUP98P52948 AC112191.1-201ENST00000523689 701 ntBASIC21.63■■□□□ 1.05
NUP98P52948 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NUP98P52948 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC21.63■■□□□ 1.05
NUP98P52948 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC21.63■■□□□ 1.05
NUP98P52948 AC105339.1-204ENST00000636249 355 ntBASIC21.63■■□□□ 1.05
NUP98P52948 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NUP98P52948 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NUP98P52948 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
NUP98P52948 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NUP98P52948 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
NUP98P52948 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
NUP98P52948 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NUP98P52948 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
NUP98P52948 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
NUP98P52948 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
NUP98P52948 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
NUP98P52948 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC21.62■■□□□ 1.05
NUP98P52948 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC21.62■■□□□ 1.05
NUP98P52948 LSM12-202ENST00000585388 942 ntTSL 3 BASIC21.62■■□□□ 1.05
NUP98P52948 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
NUP98P52948 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC21.62■■□□□ 1.05
NUP98P52948 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms