Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL8A1P27658 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL8A1P27658 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL8A1P27658 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL8A1P27658 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL8A1P27658 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC15.29■□□□□ 0.04
COL8A1P27658 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
COL8A1P27658 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC15.29■□□□□ 0.04
COL8A1P27658 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC15.29■□□□□ 0.04
COL8A1P27658 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC15.29■□□□□ 0.04
COL8A1P27658 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
COL8A1P27658 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC15.29■□□□□ 0.04
COL8A1P27658 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC15.29■□□□□ 0.04
COL8A1P27658 RIN3-211ENST00000557762 517 ntTSL 3 BASIC15.29■□□□□ 0.04
COL8A1P27658 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC15.29■□□□□ 0.04
COL8A1P27658 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC15.29■□□□□ 0.04
COL8A1P27658 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC15.29■□□□□ 0.04
COL8A1P27658 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC15.29■□□□□ 0.04
COL8A1P27658 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
COL8A1P27658 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC15.29■□□□□ 0.04
COL8A1P27658 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL8A1P27658 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL8A1P27658 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL8A1P27658 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC15.29■□□□□ 0.04
COL8A1P27658 SIRPAP1-201ENST00000448467 1770 ntBASIC15.29■□□□□ 0.04
COL8A1P27658 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL8A1P27658 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL8A1P27658 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL8A1P27658 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
COL8A1P27658 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL8A1P27658 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
COL8A1P27658 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
COL8A1P27658 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC15.28■□□□□ 0.04
COL8A1P27658 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL8A1P27658 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL8A1P27658 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL8A1P27658 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC15.28■□□□□ 0.04
COL8A1P27658 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC15.28■□□□□ 0.04
COL8A1P27658 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
COL8A1P27658 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC15.28■□□□□ 0.04
COL8A1P27658 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC15.28■□□□□ 0.04
COL8A1P27658 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL8A1P27658 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL8A1P27658 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC15.28■□□□□ 0.04
COL8A1P27658 GRAP-202ENST00000395635 834 ntTSL 2 BASIC15.28■□□□□ 0.04
COL8A1P27658 AL627223.1-201ENST00000416693 442 ntBASIC15.28■□□□□ 0.04
COL8A1P27658 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
COL8A1P27658 CIPC-205ENST00000555437 566 ntTSL 3 BASIC15.28■□□□□ 0.04
COL8A1P27658 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC15.28■□□□□ 0.04
COL8A1P27658 AC068137.2-201ENST00000605408 478 ntBASIC15.28■□□□□ 0.04
COL8A1P27658 MIR6752-201ENST00000618442 71 ntBASIC15.28■□□□□ 0.04
COL8A1P27658 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
COL8A1P27658 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL8A1P27658 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC15.28■□□□□ 0.04
COL8A1P27658 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC15.28■□□□□ 0.04
COL8A1P27658 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL8A1P27658 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC15.28■□□□□ 0.04
COL8A1P27658 ADM-208ENST00000534464 1640 ntTSL 2 BASIC15.28■□□□□ 0.04
COL8A1P27658 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL8A1P27658 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL8A1P27658 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL8A1P27658 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL8A1P27658 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC15.28■□□□□ 0.04
COL8A1P27658 MYLKP1-201ENST00000509077 1580 ntBASIC15.28■□□□□ 0.04
COL8A1P27658 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL8A1P27658 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC15.28■□□□□ 0.04
COL8A1P27658 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
COL8A1P27658 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL8A1P27658 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
COL8A1P27658 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL8A1P27658 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC15.27■□□□□ 0.04
COL8A1P27658 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL8A1P27658 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC15.27■□□□□ 0.04
COL8A1P27658 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL8A1P27658 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC15.27■□□□□ 0.04
COL8A1P27658 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC15.27■□□□□ 0.04
COL8A1P27658 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
COL8A1P27658 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL8A1P27658 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL8A1P27658 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC15.27■□□□□ 0.04
COL8A1P27658 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC15.27■□□□□ 0.04
COL8A1P27658 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
COL8A1P27658 COX11-202ENST00000571584 1108 ntTSL 2 BASIC15.27■□□□□ 0.04
COL8A1P27658 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC15.27■□□□□ 0.04
COL8A1P27658 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC15.27■□□□□ 0.04
COL8A1P27658 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC15.27■□□□□ 0.04
COL8A1P27658 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC15.27■□□□□ 0.04
COL8A1P27658 AC015911.4-201ENST00000588022 1070 ntBASIC15.27■□□□□ 0.04
COL8A1P27658 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.04
COL8A1P27658 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC15.27■□□□□ 0.04
COL8A1P27658 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
COL8A1P27658 TNXA-203ENST00000507684 2038 ntBASIC15.27■□□□□ 0.03
COL8A1P27658 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL8A1P27658 AC006116.8-202ENST00000587620 1550 ntBASIC15.27■□□□□ 0.03
COL8A1P27658 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL8A1P27658 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL8A1P27658 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC15.27■□□□□ 0.03
COL8A1P27658 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
COL8A1P27658 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
COL8A1P27658 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms