Protein–RNA interactions for Protein: O43175

PHGDH, D-3-phosphoglycerate dehydrogenase, humanhuman

Known RBP Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDHO43175 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PHGDHO43175 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
PHGDHO43175 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
PHGDHO43175 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.5■□□□□ 0.39
PHGDHO43175 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
PHGDHO43175 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
PHGDHO43175 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
PHGDHO43175 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.5■□□□□ 0.39
PHGDHO43175 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PHGDHO43175 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PHGDHO43175 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PHGDHO43175 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.49■□□□□ 0.39
PHGDHO43175 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.49■□□□□ 0.39
PHGDHO43175 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PHGDHO43175 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.49■□□□□ 0.39
PHGDHO43175 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PHGDHO43175 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PHGDHO43175 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PHGDHO43175 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PHGDHO43175 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
PHGDHO43175 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC17.49■□□□□ 0.39
PHGDHO43175 AC211429.1-201ENST00000415277 523 ntBASIC17.49■□□□□ 0.39
PHGDHO43175 AC005104.2-201ENST00000427818 678 ntBASIC17.49■□□□□ 0.39
PHGDHO43175 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC17.49■□□□□ 0.39
PHGDHO43175 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
PHGDHO43175 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PHGDHO43175 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PHGDHO43175 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC17.49■□□□□ 0.39
PHGDHO43175 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
PHGDHO43175 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
PHGDHO43175 Z83836.1-201ENST00000624605 1642 ntBASIC17.49■□□□□ 0.39
PHGDHO43175 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PHGDHO43175 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PHGDHO43175 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC17.49■□□□□ 0.39
PHGDHO43175 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
PHGDHO43175 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PHGDHO43175 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
PHGDHO43175 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PHGDHO43175 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PHGDHO43175 LINC01311-201ENST00000565162 1445 ntBASIC17.48■□□□□ 0.39
PHGDHO43175 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
PHGDHO43175 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PHGDHO43175 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PHGDHO43175 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
PHGDHO43175 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
PHGDHO43175 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PHGDHO43175 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PHGDHO43175 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC17.48■□□□□ 0.39
PHGDHO43175 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PHGDHO43175 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PHGDHO43175 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PHGDHO43175 SPDYE13P-201ENST00000445314 798 ntBASIC17.48■□□□□ 0.39
PHGDHO43175 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
PHGDHO43175 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
PHGDHO43175 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PHGDHO43175 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC17.48■□□□□ 0.39
PHGDHO43175 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC17.48■□□□□ 0.39
PHGDHO43175 RBM42-202ENST00000586618 771 ntTSL 3 BASIC17.48■□□□□ 0.39
PHGDHO43175 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC17.48■□□□□ 0.39
PHGDHO43175 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.48■□□□□ 0.39
PHGDHO43175 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.48■□□□□ 0.39
PHGDHO43175 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC17.48■□□□□ 0.39
PHGDHO43175 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC17.48■□□□□ 0.39
PHGDHO43175 ANKRD20A8P-203ENST00000641373 517 ntBASIC17.48■□□□□ 0.39
PHGDHO43175 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
PHGDHO43175 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
PHGDHO43175 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PHGDHO43175 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
PHGDHO43175 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
PHGDHO43175 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
PHGDHO43175 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PHGDHO43175 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
PHGDHO43175 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PHGDHO43175 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PHGDHO43175 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.47■□□□□ 0.39
PHGDHO43175 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PHGDHO43175 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PHGDHO43175 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC17.47■□□□□ 0.39
PHGDHO43175 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PHGDHO43175 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PHGDHO43175 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PHGDHO43175 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PHGDHO43175 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
PHGDHO43175 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC17.47■□□□□ 0.39
PHGDHO43175 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.47■□□□□ 0.39
PHGDHO43175 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PHGDHO43175 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
PHGDHO43175 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PHGDHO43175 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
PHGDHO43175 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PHGDHO43175 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PHGDHO43175 AC092647.4-201ENST00000457211 535 ntBASIC17.47■□□□□ 0.39
PHGDHO43175 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC17.47■□□□□ 0.39
PHGDHO43175 NAA38-203ENST00000575071 553 ntTSL 2 BASIC17.47■□□□□ 0.39
PHGDHO43175 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PHGDHO43175 WDR6-223ENST00000627177 207 ntTSL 2 BASIC17.47■□□□□ 0.39
PHGDHO43175 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PHGDHO43175 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PHGDHO43175 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PHGDHO43175 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms