Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC17.96■□□□□ 0.47
CBX4O00257 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
CBX4O00257 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CBX4O00257 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.96■□□□□ 0.47
CBX4O00257 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.96■□□□□ 0.47
CBX4O00257 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.46
CBX4O00257 PMPCAP1-201ENST00000508114 1576 ntBASIC17.96■□□□□ 0.46
CBX4O00257 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
CBX4O00257 AL133373.2-201ENST00000623187 2828 ntBASIC17.95■□□□□ 0.46
CBX4O00257 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CBX4O00257 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CBX4O00257 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
CBX4O00257 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
CBX4O00257 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CBX4O00257 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC17.95■□□□□ 0.46
CBX4O00257 PAN3-AS1-201ENST00000563843 1351 ntBASIC17.95■□□□□ 0.46
CBX4O00257 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CBX4O00257 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.95■□□□□ 0.46
CBX4O00257 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
CBX4O00257 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CBX4O00257 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC17.95■□□□□ 0.46
CBX4O00257 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CBX4O00257 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC17.95■□□□□ 0.46
CBX4O00257 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CBX4O00257 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CBX4O00257 AC073592.5-201ENST00000624854 528 ntBASIC17.95■□□□□ 0.46
CBX4O00257 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
CBX4O00257 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CBX4O00257 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CBX4O00257 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CBX4O00257 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CBX4O00257 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CBX4O00257 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CBX4O00257 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.95■□□□□ 0.46
CBX4O00257 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC17.95■□□□□ 0.46
CBX4O00257 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CBX4O00257 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CBX4O00257 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CBX4O00257 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
CBX4O00257 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC17.95■□□□□ 0.46
CBX4O00257 AL353593.2-201ENST00000602529 1483 ntBASIC17.95■□□□□ 0.46
CBX4O00257 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
CBX4O00257 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.94■□□□□ 0.46
CBX4O00257 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
CBX4O00257 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.94■□□□□ 0.46
CBX4O00257 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
CBX4O00257 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
CBX4O00257 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
CBX4O00257 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CBX4O00257 AC134043.2-201ENST00000624206 2238 ntBASIC17.94■□□□□ 0.46
CBX4O00257 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
CBX4O00257 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CBX4O00257 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
CBX4O00257 HIST2H3DP1-201ENST00000401004 416 ntBASIC17.94■□□□□ 0.46
CBX4O00257 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC17.94■□□□□ 0.46
CBX4O00257 SCARNA2-201ENST00000458748 420 ntBASIC17.94■□□□□ 0.46
CBX4O00257 AL662844.1-201ENST00000546340 181 ntBASIC17.94■□□□□ 0.46
CBX4O00257 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
CBX4O00257 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
CBX4O00257 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC17.94■□□□□ 0.46
CBX4O00257 TP73-AS1-207ENST00000624167 988 ntBASIC17.94■□□□□ 0.46
CBX4O00257 VPS51-217ENST00000639871 243 ntTSL 5 BASIC17.94■□□□□ 0.46
CBX4O00257 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CBX4O00257 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CBX4O00257 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.94■□□□□ 0.46
CBX4O00257 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CBX4O00257 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC17.94■□□□□ 0.46
CBX4O00257 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CBX4O00257 AL356309.3-201ENST00000624132 1934 ntBASIC17.94■□□□□ 0.46
CBX4O00257 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.93■□□□□ 0.46
CBX4O00257 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CBX4O00257 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CBX4O00257 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.93■□□□□ 0.46
CBX4O00257 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
CBX4O00257 AL355312.1-201ENST00000407115 2176 ntBASIC17.93■□□□□ 0.46
CBX4O00257 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.93■□□□□ 0.46
CBX4O00257 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CBX4O00257 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CBX4O00257 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CBX4O00257 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CBX4O00257 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CBX4O00257 FAM197Y8-203ENST00000450145 560 ntBASIC17.93■□□□□ 0.46
CBX4O00257 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CBX4O00257 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CBX4O00257 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC17.93■□□□□ 0.46
CBX4O00257 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC17.93■□□□□ 0.46
CBX4O00257 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CBX4O00257 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CBX4O00257 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CBX4O00257 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CBX4O00257 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC17.93■□□□□ 0.46
CBX4O00257 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.93■□□□□ 0.46
CBX4O00257 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CBX4O00257 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CBX4O00257 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CBX4O00257 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC17.93■□□□□ 0.46
CBX4O00257 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
CBX4O00257 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CBX4O00257 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CBX4O00257 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms